| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 514610 | NA (NA) | 3 (0.090) | 3/244 | NT | 51.4% | intergenic (+278/‑96) | rrs1/rrl1 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | CP000730 | = 558903 | 3 (0.080) | intergenic (+116/‑54) | USA300HOU_t0012/rrl2 | tRNA‑Ile/23S ribosomal RNA | |||||
TCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGT > CP000730/558766‑559043 | tCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGaa > 2:270513/1‑141 (MQ=255) gAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCtttcg > 1:356067‑M2/1‑136 (MQ=255) gAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAg < 2:51551/141‑1 (MQ=40) aCTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACt > 2:262889/1‑141 (MQ=35) aGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCtttcgaacactagcg > 1:20670‑M2/1‑126 (MQ=255) gCCCANCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAg < 1:125647/141‑1 (MQ=14) aaTAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCgaaagaacactagcgattatttcttatgaattcaagcttatttaaaactctttatt > 2:250111‑M2/1‑52 (MQ=255) aaTAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCgaaagaacactagcgattatttcttatgaattcaagcttatttaaaactctttatt < 1:250111‑M2/108‑57 (MQ=255) aagaatCGCTATTTTTCTAAAGAACGCTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGTATGCCGTGGCACGAGAAGGCGATGATGGACGTGACGTACCACGata < 2:65129/138‑1 (MQ=1) aGTGTTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcg < 1:248409‑M2/141‑135 (MQ=255) aGTGTTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcg < 1:217355‑M2/141‑135 (MQ=255) gtgtTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgc < 1:416392‑M2/141‑136 (MQ=255) tgtTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgct < 2:352234‑M2/141‑137 (MQ=255) tgtTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgct > 2:378939‑M2/1‑5 (MQ=255) tgtTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagtttgcaatgtacaatttctttttagtcaagcgct < 2:301200‑M2/141‑137 (MQ=255) gtTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgctc < 1:304291‑M2/141‑138 (MQ=255) gtTCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactatttcttaacaaggtcttgcttggtaaaatctatattttacttacttatcgagttttcaatgtacaatttctttttagtcaagcgctc > 1:201039‑M2/1‑4 (MQ=255) ttCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttctatgtacaatttctttttagtcaagcgctcg < 2:46726‑M2/141‑139 (MQ=255) ttCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgctcg > 1:331048‑M2/1‑3 (MQ=255) ttCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgctcg > 1:242281‑M2/1‑3 (MQ=255) ttCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagccctct < 2:89490‑M2/141‑139 (MQ=255) ttCtctcgaacactagcgatcatgtcttatgaattccagcttatttaaaactcgttcttcactcggttttgcttggtaaaatctatattttacttacttatctagtttccaatgtacaatttctatttagtcaagcgctcg < 2:404232‑M2/141‑139 (MQ=255) tCtttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgctcgc < 1:425888‑M2/141‑140 (MQ=255) ctttcgaacactagcgattatttcttatgaattcaagcttatttaaaactctttattcactcggttttgcttggtaaaatctatattttacttacttatctagttttcaatgtacaatttctttttagtcaagcgctcgca > 1:112793‑M2/1‑1 (MQ=255) | TCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGT > CP000730/558766‑559043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |