New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	9070 =	47 (1.270)	3 (0.080)	3/250	NT	6.6%	coding (2039/2664 nt)	gyrA	DNA topoisomerase (ATP‑hydrolyzing) subunit A
	?	CP000730	9088 =	40 (1.120)					coding (2057/2664 nt)	gyrA	DNA topoisomerase (ATP‑hydrolyzing) subunit A

AATAAATAGAAATGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGTA  >  CP000730/8933‑9210                                                                                                                                          |                                                                                                                                             gtcattaactggcgtacgtttaccataaccattttcagtaactactaatacttcatcaacactgtttgcatgagctacatcaagccctacaacttcgtcaccttcacgaagtgtaatacctttcacacccgttgctgTACg                                                                                                                                           <  1:171617‑M1/4‑1 (MQ=255)    aaataGAAATGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTcc                                                                                                                                        >  1:237783/1‑141 (MQ=255)     aataGAAATGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCt                                                                                                                                       >  2:323695/1‑141 (MQ=255)     aataGAAATGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCt                                                                                                                                       >  1:71576/1‑141 (MQ=255)     aataGAAATGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTATCTTAACACGTGGTCATGTAGATATTTTGATTGTTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCt                                                                                                                                       >  2:290958/1‑141 (MQ=255)        actggcgtacgtttaccataaccattttcagtaactactaatacttcatcaacactgtttgcatgagctacatcaagccctacaacttcgtcaccttcacgaagtgtaatacctttcacacccgttgctgTACGTCCTTTa                                                                                                                                    >  2:419169‑M1/131‑141 (MQ=255)         gAAATGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAg                                                                                                                                   >  1:160827/1‑141 (MQ=255)          aaaTGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGGCCtaaagg                                                                                                                                  <  1:198173/141‑6 (MQ=255)            aTGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGcc                                                                                                                                >  1:149779/1‑141 (MQ=255)              ggTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGt                                                                                                                              <  1:404373/141‑1 (MQ=255)                 aaGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACa                                                                                                                           <  1:350094/141‑1 (MQ=255)                 aaGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACa                                                                                                                           <  1:350097/141‑1 (MQ=255)                   gATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGc                                                                                                                         <  2:184887/141‑1 (MQ=255)                       gCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACg                                                                                                                     <  2:353883/141‑1 (MQ=255)                        cGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACgg                                                                                                                    <  1:314581/141‑1 (MQ=255)                        cGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCATACAGCAACgg                                                                                                                    >  1:231475/1‑141 (MQ=255)                              cGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGATCAAGAAGATATCTTGATTGTTACATCACATGCATCAGTAATTATATTCCCTGAATCATCATTACGTCCTTTAGGCCATACAgtcactggagtgt                                                                                                              >  2:414891/1‑129 (MQ=255)                                  cAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAgg                                                                                                          <  2:224691/141‑1 (MQ=255)                                    gagaAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTa                                                                                                        <  2:398001/141‑1 (MQ=255)                                        agaTGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTac                                                                                                    <  2:121259/141‑1 (MQ=255)                                        agaTGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTac                                                                                                    >  1:157331/1‑141 (MQ=255)                                         gatgatGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTAAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTaca                                                                                                   >  2:283056/1‑141 (MQ=255)                                           tgatgaGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACt                                                                                                 <  1:149884/141‑1 (MQ=255)                                               gaGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGt                                                                                             <  2:189269/141‑1 (MQ=255)                                                     aTTGCAGTTCGCTTAACAAGTGGCCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGt                                                                                       <  1:292562/141‑1 (MQ=255)                                                       tGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGa                                                                                     <  1:430950/141‑1 (MQ=255)                                                          aGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGa                                                                                  >  1:298236/1‑141 (MQ=255)                                                            ttCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGtcaccttcacgaag                                                                                <  2:126356/141‑14 (MQ=255)                                                              cGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGtt                                                                              <  2:420253/141‑1 (MQ=255)                                                               gCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTg                                                                             <  1:123123/141‑1 (MQ=255)                                                                 ttAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTa                                                                           <  2:274371/141‑1 (MQ=255)                                                                     cAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGc                                                                       >  1:243478/1‑141 (MQ=255)                                                                             cAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTa                                                               <  1:335585/141‑1 (MQ=255)                                                                                   gaTATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCAt                                                         <  2:189141/141‑1 (MQ=255)                                                                                        cTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCaaa                                                    <  1:178957/141‑1 (MQ=255)                                                                                            aTTGGTACATCACATGCATCATTAATTCGATTCCCTGGATCAACATTACGTCGTTTAGGCCGTACAGCAACGGGTGTGAAGGGTATTACACTTCGTGAAGGTGACGACGTTGTAGGGCTTGATGTAGTTCATGCCAACact                                                <  2:375627/141‑3 (MQ=255)                                                                                               ggTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGtt                                             >  2:188741/1‑141 (MQ=255)                                                                                                gTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTtg                                            >  1:195346/1‑141 (MQ=255)                                                                                                  aCATCACATGCATCATTNATTCGATTCCCTGAATCAANATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTtgat                                          >  1:252982/1‑141 (MQ=255)                                                                                                   cATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTtgatg                                         <  1:96288/141‑1 (MQ=255)                                                                                                   cATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTtgatg                                         <  2:96116/141‑1 (MQ=255)                                                                                                          tGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTAtt                                  <  2:432798/141‑1 (MQ=255)                                                                                                          tGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTAtt                                  <  2:432752/141‑1 (MQ=255)                                                                                                           gCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATta                                 <  1:108710/141‑1 (MQ=255)                                                                                                                          ttCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAAt                  >  1:426059/1‑141 (MQ=255)                                                                                                                          ttCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGGGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAAt                  >  2:71216/1‑141 (MQ=255)                                                                                                                              ctcaaTCAACTTTACGTCCTTTAGGCCGAACATCAACAGGTGTGAAAGGTATTTCTCTTCGTTAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTTTTGATGAAGTATTAGTATTAATTGAAAATGGtt              >  2:386328/4‑141 (MQ=255)                                                                                                                                 ccgttgctgTACGGCCTAAAGGACGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGt                                                                            >  1:330691‑M1/10‑76 (MQ=255)                                                                                                                                 ccgttgctgTACGGCCTAAAGGACGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGt                                                                            <  2:330691‑M1/67‑1 (MQ=255)                                                                                                                                  aTCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATgg          <  2:210159/141‑1 (MQ=255)                                                                                                                                    cAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTa        <  1:79845/141‑1 (MQ=255)                                                                                                                                      aCATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTaaa      >  2:201571/1‑141 (MQ=255)                                                                                                                                      aCATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTaaa      >  1:53326/1‑141 (MQ=255)                                                                                                                                         ttACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGt   <  1:126161/141‑1 (MQ=255)                                                                                                                                          TACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGTa  >  2:406308‑M1/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                             AATAAATAGAAATGGTAAGATTGCGATTTCGTTCAGAGAAGATGATGAGTTAATTGCAGTTCGCTTAACAAGTGGTCAAGAAGATATCTTGATTGGTACATCACATGCATCATTAATTCGATTCCCTGAATCAACATTACGTCCTTTAGGCCGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGTA  >  CP000730/8933‑9210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.