mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 65 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 35,876 | 0 | C | T | 63.9% | ‑6.2 / 82.9 | 83 | intergenic (+107/+1) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 36,413 | 0 | C | T | 61.6% | 125.0 / 287.2 | 251 | V47I (GTC→ATC) | tpn | IS431mec transposase |
| * | CP000730 | 35,970 | 0 | T | C | 60.6% | 272.8 / inf | 315 | E194E (GAA→GAG) | tpn | IS431mec transposase |
| * | CP000730 | 36,444 | 0 | C | T | 58.7% | 27.5 / 184.3 | 155 | R36R (AGG→AGA) | tpn | IS431mec transposase |
| * | CP000730 | 36,087 | 0 | A | G | 58.4% | 329.6 / inf | 423 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 36,269 | 0 | C | T | 57.3% | 84.5 / inf | 431 | A95T (GCA→ACA) | tpn | IS431mec transposase |
| * | CP000730 | 36,124 | 0 | G | A | 56.0% | 115.1 / inf | 335 | A143V (GCT→GTT) | tpn | IS431mec transposase |
| * | CP000730 | 36,315 | 0 | G | A | 55.8% | 88.5 / inf | 462 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,917 | 0 | C | T | 53.5% | 2.4 / 100.8 | 71 | intergenic (‑1000/‑168) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,918 | 0 | A | G | 53.5% | 31.1 / 85.0 | 71 | intergenic (‑1001/‑167) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 512,643 | 0 | A | G | 53.3% | 22.9 / 98.3 | 75 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 35,858 | 0 | T | A | 53.1% | 48.0 / 79.6 | 49 | intergenic (+89/+19) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 1,929,842 | 0 | T | . | 52.9% | 130.3 / 171.6 | 70 | intergenic (‑925/‑243) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,843 | 0 | A | . | 52.1% | 130.9 / 177.2 | 71 | intergenic (‑926/‑242) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 36,479 | 0 | T | C | 51.1% | 24.5 / 63.4 | 47 | T25A (ACA→GCA) | tpn | IS431mec transposase |
| * | CP000730 | 76,295 | 0 | T | C | 50.3% | 56.0 / inf | 296 | intergenic (+353/‑781) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 76,353 | 0 | G | A | 50.2% | 9.4 / inf | 211 | intergenic (+411/‑723) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 1,929,925 | 0 | T | A | 50.0% | ‑1.5 / 114.4 | 66 | intergenic (‑1008/‑160) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,928 | 0 | T | A | 50.0% | ‑1.8 / 114.0 | 66 | intergenic (‑1011/‑157) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,930 | 0 | T | A | 50.0% | ‑4.9 / 115.4 | 66 | intergenic (‑1013/‑155) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |