New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	512620 =	6 (0.770)	11 (2.080) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC	11/190	0.0	59.7%	intergenic (+688/‑173)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
	?	CP000730	2176447 =	16 (2.040)					noncoding (114/114 nt)	rrf5	5S ribosomal RNA

GGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTT  >  CP000730/512481‑512754                                                                                                                                            |                                                                                                                                       tcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaaa                                                                                                                                       <  2:28835‑M1/2‑1 (MQ=255)              catgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACt                                                                                                                          <  1:9987‑M1/15‑1 (MQ=255)                    gaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATg                                                                                                                    >  1:16416‑M1/121‑141 (MQ=255)                       aGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTTTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTta                                                                                                                 >  1:24527/1‑141 (MQ=255)                          agaagttaagctccttggcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaactttggttacaaactaaaatgaacaagataaAAAAAGTtattgacttaatagttgtta                                                                                                              <  2:62664‑M1/27‑10 (MQ=255)                                    ctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaa                                                                                                    <  1:47888‑M1/37‑1 (MQ=255)                                        ttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagtttttttttttttttttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaattaa                                                                                                <  2:80846‑M1/41‑1 (MQ=255)                                                   ggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGt                                                                                     >  2:1692‑M1/90‑141 (MQ=255)                                                    gtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacacgataaAAAAAGTTATTGACTTAAATGTTGGTAAAATGTATAATTAATTCTTGTCGGTa                                                                                    <  1:25363‑M1/53‑1 (MQ=255)                                                             tGTATAGTAATTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATg                                                                           <  2:39894/141‑1 (MQ=255)                                                             cttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATg                                                                           >  1:57049‑M1/80‑141 (MQ=255)                                                                                   cgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGAGAAAATGTATAATTAATTCATGTCGGTAAGAAAAATGAACATTGAAAACAGAATGACaa                                                     <  1:41086‑M1/84‑1 (MQ=255)                                                                                          aggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCa                                              <  2:30710‑M1/91‑1 (MQ=255)                                                                                                       tAAGAAGTAAGTTGAATTACTAACGAAAATTAATTTGAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTGGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaa                                 <  2:53341/141‑1 (MQ=255)                                                                                                        taaaattntggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGacaatatgtcaacataaaaaaaaaa                                >  2:65344‑M1/37‑129 (MQ=255)                                                                                                                   tGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTATCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACta                     >  1:21421/1‑141 (MQ=255)                                                                                                                                aaaaTTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACa        <  2:63678/141‑1 (MQ=255)                                                                                                                                 ggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACat       <  1:83249‑M1/130‑1 (MQ=255)                                                                                                                                      aattTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTAttt  >  2:76837/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                       GGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTT  >  CP000730/512481‑512754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.