New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1805304 =	43 (0.780)	4 (0.080)	4/238	NT	9.2%	intergenic (+2276/+49)	cycA/pykA	APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase
	?	CP000730	1805347 =	39 (0.760)					intergenic (+2319/+6)	cycA/pykA	APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase

ATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAACCAACAAT  >  CP000730/1805209‑1805487                                                                                                                                           |                                                                                                                                             aTGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtat                                                                                                                                            >  2:311191/1‑141 (MQ=255)          aGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAATCGCCTTTCCATTGTTGATAAATGGAAAGACG‑TTTTTTATAAATTATAGt                                                                                                                                  <  2:107098/141‑1 (MQ=255)             tataAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATATTaa                                                                                                                                >  1:582463/1‑140 (MQ=255)                         tataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATcc                                                                                                                    <  1:441108/141‑1 (MQ=255)                          ataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCt                                                                                                                   >  2:552243/1‑141 (MQ=255)                           taGATTGCCATTCATACACTAACATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACAAAAAAACGCCTTTCCATTGTTGATAAAAGGAAACACGTTTTTTTATAAATTATATTACGTTTGCATATCCtt                                                                                                                  >  2:357137/1‑141 (MQ=255)                             gATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa                                                                                                                <  2:251317/141‑1 (MQ=255)                              aTTGCCATTCATAAACTATCATTATCAAATAACCTATTTAGTACGTCATAAAATACCAGATGAACCAAAAGACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCaa                                                                                                               <  1:491529/141‑1 (MQ=255)                                tGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAg                                                                                                             >  2:350103/1‑141 (MQ=255)                                 gttacgattgatgctgctcaaggtaaaatctttgaaggatatgcaaacgtactataatttataaaaaaacgcctttccattgttgataaatggaaagacgttttttTATAAATTATAGTACGTTTGCATATCCTTCAAAGa                                                                                                            <  1:287130‑M2/35‑1 (MQ=255)                                 gCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGa                                                                                                            <  2:682003/141‑1 (MQ=255)                                      tCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTa                                                                                                       <  2:630389/141‑1 (MQ=255)                                        aTACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTAcc                                                                                                     <  1:353222/141‑1 (MQ=255)                                          acacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAATACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCtt                                                                                                   <  2:499415/141‑1 (MQ=255)                                           cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTg                                                                                                  >  2:544774/1‑141 (MQ=255)                                           cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGCTTGCATATCCTTCAAAGATTTTACCTTg                                                                                                  >  1:628194/1‑141 (MQ=255)                                                  aTTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAgcagca                                                                                           >  2:108057/1‑141 (MQ=255)                                                     aTCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCa                                                                                        <  1:344875/141‑1 (MQ=255)                                                       cAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTTTTGATAAATGGAAAGACGTGTGTTTATAAATTATAGTACGTTTGCATAGCCGTCAAAGATTTGACCTTGAGCAGCATCAAt                                                                                      >  2:326339/1‑141 (MQ=255)                                                          aTAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGt                                                                                   <  1:434611/141‑1 (MQ=255)                                                             tctttgaaggatatgcaaacgtactataatttataAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGtaac                                                                                <  1:287130‑M1/106‑1 (MQ=255)                                                               cTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGtaacta                                                                              >  1:69505/1‑141 (MQ=255)                                                                   taattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACAt                                                                          <  1:27616/141‑1 (MQ=255)                                                                        aCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTAt                                                                     >  1:497582/1‑141 (MQ=255)                                                                          gTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTg                                                                   >  1:284512/1‑141 (MQ=255)                                                                          gTCATAAAATACCAGATGAACCAAAAAACGCCTTTCAATAGTTGATAAAGGGAAAGACGTATTTTTATAAATTATAGTACGTTTGCATATCCTTAAAAGATTTTAACTTGAGCAGCATCCATCGAAACTAACATGTTATTg                                                                   >  2:328740/1‑141 (MQ=255)                                                                           tCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGc                                                                  <  1:552483/141‑1 (MQ=255)                                                                                aaaTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATg                                                             <  2:228701/141‑1 (MQ=255)                                                                                  aTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGtt                                                           <  2:453067/141‑1 (MQ=255)                                                                                        gATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAAc                                                     <  2:672798/141‑1 (MQ=255)                                                                                             aCCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCtt                                                <  2:84871/141‑1 (MQ=255)                                                                                               cAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCtttt                                              >  1:621178/1‑141 (MQ=255)                                                                                               cAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTACTTATGTTTTTAAAACCtttt                                              >  2:503111/1‑141 (MQ=255)                                                                                                 AAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTc                                            <  1:188331‑M1/141‑1 (MQ=255)                                                                                                 AAAAACGCCTTTACATAGTTGATAAATGGAAAGACGTATTTTGATAAATTATAGTACGTTTGCATATCCTTCAAAGATATTAACTTGAGCAGCATCAATCGTAAATAACATGTTATGGCTTAGGTTATTACAGGCTTTTTc                                            <  2:661807‑M1/141‑1 (MQ=255)                                                                                                    AACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAGTCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTac                                         >  1:587228‑M1/1‑141 (MQ=255)                                                                                                      CGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTacac                                       <  1:122286‑M1/141‑1 (MQ=255)                                                                                                       gtctttccatttatcaacaatggaaaggcgttttttTATAAATTATAGTACGTTTGCATATCCTTCaa                                                                                                               >  2:58733‑M2/37‑68 (MQ=255)                                                                                                       gtctttccatttatcaacaatggaaaggcgttttttTATAAATTATAGTACGTTTGCATATCCTTCaa                                                                                                               <  1:58733‑M2/32‑1 (MQ=255)                                                                                                       GCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACAcc                                      >  1:350103‑M1/1‑141 (MQ=255)                                                                                                        ccTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCt                                     >  1:611998/1‑141 (MQ=255)                                                                                                        ccTTTCCATTGTTGAAAAATGGAAAGACGTTTTTTTATAAAGTATAGTACGTTGGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTCTTTCTACACCt                                     >  2:421286/1‑141 (MQ=255)                                                                                                         cTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAACTTTTTCTACACCTa                                    <  2:595018/141‑1 (MQ=255)                                                                                                          tttccatttatcaacaatggaaaggcgttttttTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTAc                                   >  1:198549‑M2/34‑141 (MQ=255)                                                                                                            tCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACaa                                 >  1:550824/1‑141 (MQ=255)                                                                                                                ttgttgATAAATGGAAAGACGTTTTTTTATAAATGATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGt                             <  2:272523/141‑1 (MQ=255)                                                                                                                    tgATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGa                         >  2:70428/1‑141 (MQ=255)                                                                                                                        aaaTGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATAc                     <  1:621080/141‑1 (MQ=255)                                                                                                                        aaaTGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATAc                     >  1:196628/1‑141 (MQ=255)                                                                                                                           tGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCtt                  <  2:340850/141‑1 (MQ=255)                                                                                                                               aaGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACATCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTc              <  2:227281/141‑1 (MQ=255)                                                                                                                                    gttttttTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAAc         <  1:552243‑M2/134‑1 (MQ=255)                                                                                                                                      tttttTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAACca       >  2:143506‑M2/6‑141 (MQ=255)                                                                                                                                           tataAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAACCAACAAt  <  2:611998/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             ATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAACCAACAAT  >  CP000730/1805209‑1805487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.