New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	531230 =	49 (0.890)	4 (0.080)	4/242	NT	8.5%	intergenic (+801/‑4924)	veg/rplY	hypothetical protein/ribosomal protein L25
	?	CP000730	531269 =	39 (0.740)					intergenic (+840/‑4885)	veg/rplY	hypothetical protein/ribosomal protein L25

TCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAATCGATTAGAGCCAATTTCTGTTTCAAAA  >  CP000730/531133‑531407                                                                                                                                         |                                                                                                                                           acataattgttgataatctcgattttctaaggcctcataacacattttcgtatgtacgtcgtaacgcttatctaaattaatcaacttaaatatatctGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGata                                                                                                                                        >  2:7049‑M1/98‑141 (MQ=255)   gggACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTAGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGatata                                                                                                                                      >  1:618192/1‑141 (MQ=255)    ggACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGatatat                                                                                                                                     >  2:375246/1‑141 (MQ=255)     gACAGATATTCCGTTTTGTATCTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTGTTTAAACAAACCACCTTCAGCGTGGGTGAGTCTTGCTAAACCAAACTTAGGCATATCAATACCAGATATAtt                                                                                                                                    >  2:343769/1‑141 (MQ=255)              tCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGAt                                                                                                                           <  1:375246/141‑1 (MQ=255)                 gTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGCCAGTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTaa                                                                                                                        >  1:187469/1‑141 (MQ=255)                   tttGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAAGTTAGGCATATCATCACCAGATATATTTAAGTTGATTAAtt                                                                                                                      >  2:626098/1‑141 (MQ=255)                   tttGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAAtt                                                                                                                      >  2:510909/1‑141 (MQ=255)                   tttGTAGTTATAATAAAGGTGCACTATGTACTGGAGGAGGAGAGAAAATCGGGTTTTTAAATAAGCCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAAtt                                                                                                                      <  2:212748/141‑1 (MQ=255)                      gTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAg                                                                                                                   <  2:416005/141‑1 (MQ=255)                           tataATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAg                                                                                                              <  1:473509/141‑1 (MQ=255)                                  aaaCTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTacg                                                                                                       >  1:270653/1‑141 (MQ=255)                                    aCTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTacgac                                                                                                     >  2:435698/1‑141 (MQ=255)                                     cTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTacgacg                                                                                                    >  1:490364/1‑141 (MQ=255)                                       gCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTa                                                                                                  >  2:612995/1‑141 (MQ=255)                                         aCTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACa                                                                                                >  1:238730/1‑141 (MQ=255)                                         aCTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACa                                                                                                >  2:378594/1‑141 (MQ=255)                                               tACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGaa                                                                                          >  1:487488/1‑141 (MQ=255)                                                          gagagaAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACAACGTACATACGAAAATGTGTTATg                                                                               <  2:618192/141‑1 (MQ=255)                                                                  aTCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTa                                                                       <  2:462912/141‑1 (MQ=255)                                                                  aTCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTa                                                                       <  1:594479/141‑1 (MQ=255)                                                                   tCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAg                                                                      <  1:85149/141‑1 (MQ=255)                                                                   tCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAg                                                                      >  1:349627/1‑141 (MQ=255)                                                                       gTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTATGACGTACATACGAAAATGTGTTATGAGGCCTTAGaaaa                                                                  >  1:709047/1‑141 (MQ=255)                                                                       gTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGaaaa                                                                  >  1:79568/1‑141 (MQ=255)                                                                         ttttAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCATTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATc                                                                <  2:397819/141‑1 (MQ=255)                                                                          tttAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTGGAAAATCg                                                               >  2:201335/1‑141 (MQ=255)                                                                            taaataaaCCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCgag                                                             >  1:578952/1‑141 (MQ=255)                                                                                  aaCCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATc                                                       <  2:486855/141‑1 (MQ=255)                                                                                   aacttaaatatatctggtgatgatatgcctaagtttggtttagcaagaatcaccAGATATATTTAAGtt                                                                                                                              <  2:537011‑M2/15‑1 (MQ=255)                                                                                   aacttaaatatatctggtgatgatatgcctaagtttggtttagcaagaatcaccAGATATATTTAAGtt                                                                                                                              >  1:537011‑M2/55‑69 (MQ=255)                                                                                   aacttaaatatatctGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGtt                                                                                                                              >  1:537011‑M1/16‑69 (MQ=255)                                                                                   aacttaaatatatctGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGtt                                                                                                                              <  2:537011‑M1/54‑1 (MQ=255)                                                                                    ccaccTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATcaa                                                     >  1:399254/1‑141 (MQ=255)                                                                                      accTTCAGCTTGGGTGATTCTTGCTAAAAAAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTTGATAAGCGATACGACGTACATACAAAAATGTATTATGAAAAACCAAAAAATCGAGATTATcaaca                                                   >  2:462651/1‑141 (MQ=255)                                                                                            aGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATg                                             <  2:564941/141‑1 (MQ=255)                                                                                            aGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATg                                             <  1:435698/141‑1 (MQ=255)                                                                                             tatctggtgatgatatgcctaagtttggtttagcaagaatcaccAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGt                                            >  2:7049‑M2/45‑141 (MQ=255)                                                                                             gCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGt                                            <  1:615434/141‑1 (MQ=255)                                                                                                      atgatatgcctaagtttggtttagcaagaatcaccAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTg                                   >  1:28811‑M2/36‑141 (MQ=255)                                                                                                           tGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTaa                              >  2:699731/1‑141 (MQ=255)                                                                                                            gCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAAt                             >  2:528527/1‑141 (MQ=255)                                                                                                                      aCTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAATCGATTAGAGc                   <  2:487488/141‑1 (MQ=255)                                                                                                                         tAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTc                                           <  2:485449/114‑1 (MQ=255)                                                                                                                         tAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTc                                           >  1:485449/1‑114 (MQ=255)                                                                                                                           ggCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAATCGATTAGAGCCAAtt              >  2:144351/1‑141 (MQ=255)                                                                                                                                  catcaCCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAATCGATTAGAGCCAATTTCTGttt       <  2:541807/141‑1 (MQ=255)                                                                                                                                    tcaccAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAATCGATTAGAGCCAATTTCTGTTTCa     <  2:460452‑M2/136‑1 (MQ=255)                                                                                                                                       ccAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAATCGATTAGAGCCAATTTCTGTTTCaaaa  >  2:402609‑M2/3‑141 (MQ=255)                                                                                                                                         |                                                                                                                                           TCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGTCAAAGTTTGTCTAATCGATTAGAGCCAATTTCTGTTTCAAAA  >  CP000730/531133‑531407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.