| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2716752 | 42 (0.760) | 3 (0.060) | 3/232 | NT | 6.2% | intergenic (+60/+90) | ynzC/USA300HOU_2569 | hypothetical protein/possible lactoylglutatione lyase |
| ? | CP000730 | = 2716804 | 53 (1.050) | intergenic (+112/+38) | ynzC/USA300HOU_2569 | hypothetical protein/possible lactoylglutatione lyase | |||||
ATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2716606‑2716752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcccatacAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACCTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCGTATTGT < CP000730/2716804‑2716668 ATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGC < 2:571704/141‑1ATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGC > 2:276748/1‑141 AAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCAT > 1:403014/1‑141 AGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATA < 1:635498/141‑1 GTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAC > 2:46358/1‑141 GTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAC > 2:109095/1‑141 TACGGTGATATTCAAAACTAATATTTGCTCACGAGGTATTGCACTGAAGGTGCCAACTGACCTCATAAACAAAGCCCATCCAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC < 2:612963/141‑1 TTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTA < 2:22189/112‑1 TTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTA > 1:22189/1‑112 AAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACCTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCG < 1:481557/141‑1 AGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACCTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCGT > 1:475806/1‑141 CCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACCTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCGTAT > 2:562309/1‑141 CATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACTTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCGTATTG < 1:545093/141‑1 ATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACCTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCGTATTGT < 1:580322/141‑1 ATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACCTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCGTATTGT < 1:158682/141‑1 ATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2716606‑2716752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcccatacAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTGTTTATGAGGTCAGTTGGCACCTTAAGTGCAATACCTCGTGAGCAAATATTAATTTTGAATATAACCGTATTGT < CP000730/2716804‑2716668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |