| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2609395 = | 51 (0.930) | 5 (0.100) | 5/230 | NT | 10.6% | intergenic (‑225/‑210) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 2609451 = | 38 (0.760) | intergenic (‑281/‑154) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein | |||||
CAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2609541‑2609395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagaagcttttTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCCT > CP000730/2609451‑2609588 CAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA < 1:203322/141‑1 AAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGC < 1:303113/141‑1 AAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGC < 1:233256/141‑1 GAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTT < 2:190762/141‑1 AAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTT > 2:511468/1‑127 AAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTT < 1:511468/127‑1 ATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA > 1:229242/1‑92 ATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA < 2:229242/92‑1 TATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATA < 2:646112/90‑1 TATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATA > 1:646112/1‑90 TTCTAATGTGATACAGGACCCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTa > 1:686825/1‑140 GTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATG > 1:147710/1‑86 GTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATG < 2:147710/86‑1 gagGCTTTTTTGTTGCGGGGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTATACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCT < 2:30585/138‑1 GAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCT < 1:397905/141‑1 AAGCTTTTTTGTTTCTGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTT > 2:253244/1‑141 AAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTT < 1:520/141‑1 GCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATACTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCG < 1:611783/141‑1 CTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGC < 1:588390/141‑1 TTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCCT > 1:374192/1‑141 CAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2609541‑2609395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagaagcttttTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCCT > CP000730/2609451‑2609588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |