New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2141638 =	51 (0.930)	3 (0.060)	3/242	NT	5.9%	coding (450/1617 nt)	groEL	chaperone GroEL
	?	CP000730	2141666 =	47 (0.900)					coding (422/1617 nt)	groEL	chaperone GroEL

GCTTGAAAAATGTTACAAGTGGTGCGAACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2141783‑2141638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGA  >  CP000730/2141666‑2141803                                                                                                                                                                                                                                                                                                GCTTGAAAAATGTTACAAGTGGTGCGAACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCG‑‑A                                                                                                                                                 <  2:230760/141‑1   ctcaacgATGTTACAAGTTGTGGGAACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAACAATGATATTGCGCAAGTAGGTGCG‑‑ATT                                                                                                                                               <  2:25155/134‑1    TGAAAAATGTTACAAGTGGTGCGAACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTT                                                                                                                                              >  2:212638/1‑141    TGAAAAATGTTACAAGTGGTGCGAACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTT                                                                                                                                              >  1:31688/1‑141     GAAAAATGTTACAAGTGGTGCGAACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTTC                                                                                                                                             >  1:586650/1‑141      AAAAATGTTACAAGTGGTGCGAACTCAGTTGGTTTACGACAAGGTATAGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACAAAAAAAAAATAAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTTCA                                                                                                                                            <  2:637214/141‑1                           AACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAAT‑‑CGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGA                                                                                                                       <  1:508254/141‑1                                                                                                                  AAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCAC                                        <  2:645867/133‑1                                                                                                                  AAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCAC                                        >  1:645867/1‑133                                                                                                                                               ATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCT     >  1:627701/1‑141                                                                                                                                                  TCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTGTTGAATCATTGCTTGA  <  1:248690/141‑1                                                                                                                                                                                                                                                                                                GCTTGAAAAATGTTACAAGTGGTGCGAACCCAGTTGGTTTACGACAAGGTATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCG‑‑ATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2141783‑2141638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGA  >  CP000730/2141666‑2141803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.