New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	673 (1.050)	8 (0.010)	5/268	46.9	1.3%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
	?	NC_012417	= 2949	593 (0.960)					intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2794‑2937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA  <  NC_012417/2949‑2811                                                                                                                                                                                                                                                                                             TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCTTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTATGTTTAGAAGTTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                                                                 >  2:54778/1‑140 TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTCTTCATCGGTTGTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                                                                 >  2:159137/1‑140 TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                                                                 >  1:2976/1‑140 TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                                                                 <  1:19920/140‑1 TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                                                                 >  1:165899/1‑140  TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTTTTCATTGGTTTTCACATTATTTTATTTATGTTTATAGGTTTATATTAAGAAGAAGGAATTTGTTGTTTTTTGA                                                                                                                                                >  2:113836/1‑140  TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGTTTTTCACATTAATTTATTTATGTTTATAGTGTCATAGAAAGAAGAAGGAATAGGTTGTTTTTTGt                                                                                                                                                >  2:150165/1‑139  TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAGAAACGAATGGGGATAGGTTGTTTTTTGA                                                                                                                                                <  2:82685/140‑1  TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                                                                <  2:64372/140‑1  TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                                                                <  1:33765/140‑1  TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                                                                <  1:47267/140‑1   cATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGATTGTTTTTTGAA                                                                                                                                               >  1:11974/2‑140   AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGTTTTAGAGGTTTATAAAAAGATGAAGGTATATGTTGTTTTTTGAA                                                                                                                                               >  2:151714/1‑140   AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAACAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                                                                               >  2:16337/1‑140   AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                                                                               >  1:15847/1‑140   AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                                                                               >  2:216574/1‑140   AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGAGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                                                                               <  2:201919/140‑1    ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                                                                              >  2:41818/1‑140     TTTTTAATTTTGTTAATTCGATTTTATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                             <  2:150776/140‑1     TTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGACAGTTTTATTTATTCATTGGTTTTCACATTACTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGCATAGGTTGTTTTTTGAAAC                                                                                                                                             >  1:144810/1‑140     TTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGATAC                                                                                                                                             >  1:108705/1‑140     TTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                             <  2:167757/140‑1     TTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                             >  1:115474/1‑140     TTTTTAATTTTGTTAATTCGATTGTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                             <  1:251248/140‑1            TTTTGTTTATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                                                                      <  2:77157/140‑1                GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                                                                  <  2:167719/140‑1                GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                                                                  <  2:119990/140‑1                GTTAATTCGATATTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                                                                  <  1:153211/140‑1                 TTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTC                                                                                                                                 <  1:137504/140‑1                 TTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTC                                                                                                                                 <  1:94227/140‑1                                      ATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTC                                                                                                            <  1:229668/140‑1                                                      AGAAAGTTTTATTTATGCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACATCCTATTCCTTCTTCTTTTTATGA                                                                                            <  2:234802/140‑1                                                                                                                                            GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAACCCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAAGATTATCAAATAAAATCGA      >  2:179771/1‑140                                                                                                                                            GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGA      <  1:73823/140‑1                                                                                                                                            GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGA      >  1:254651/1‑140                                                                                                                                            GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGA      >  2:155141/1‑140                                                                                                                                            GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGA      >  1:43906/1‑140                                                                                                                                            GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGA      >  1:180486/1‑140                                                                                                                                            GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTGTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAATCAAAAGGATGATTAAATAAAATCGA      >  2:137805/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTCAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGACTTATCAAATCAAATCGAA     >  2:240696/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGACTAACTTAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAA     >  1:179148/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTACAAAGTCAAAAGGATTATCAAATAAAATCGAA     >  1:156500/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAc     >  1:231766/1‑139                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAA     >  2:38125/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAA     >  2:38114/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAA     >  1:136466/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAA     >  1:239145/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTATAAAAAGTCAAAACGATTATTAAATAAAATCGAA     >  2:194167/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACAAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAA     >  1:254940/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATGAATGTGAAAACCAATGAATAATTAAAACTTTCTAAAAAGTCAAAAGGATTATTAAATAAAATTGAA     >  2:232091/1‑140                                                                                                                                             AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTACTTCTTCTTTTTATGCCCCTCTAAACCTAAATAAATTCATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAACGATTATCAAATAAAATCGAA     >  2:44647/1‑140                                                                                                                                             AAACTAGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAAGCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGAAGTATCAAATAAAATTGAA     >  2:161715/1‑140                                                                                                                                              AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAAGTTTCTAAAAAGTCTAAAGGATTATCAAATAAAATCGAAT    >  1:135705/1‑140                                                                                                                                              AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAATTCAAAAGGATTATCAAATAAAAACGAAT    >  2:105662/1‑140                                                                                                                                              AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATAAAATAAAATAGAAT    >  2:148335/1‑140                                                                                                                                              AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGAATTATCAAATAAAATCGAAT    >  2:80853/1‑140                                                                                                                                               ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTCATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT   >  1:197759/1‑140                                                                                                                                               ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATACATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT   >  1:181684/1‑140                                                                                                                                               ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT   >  2:233786/1‑140                                                                                                                                               ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT   >  1:38396/1‑140                                                                                                                                                CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTTAAAATCAATGAATAAATACAACTTTCTAACAAGTCAAAACGATTATCAAATAAACTCTAATTA  >  2:124707/1‑140                                                                                                                                                CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA  >  2:168949/1‑140                                                                                                                                                CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA  <  2:61495/140‑1                                                                                                                                                CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAAACACAATATCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA  >  2:117892/1‑140                                                                                                                                                                                                                                                                                             TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2794‑2937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA  <  NC_012417/2949‑2811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.