| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 2326 | 3 (1.380) | 76 (0.050) | 17/254 | 0.1 | 5.1% | intergenic (+106/+62) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 1986 | 2830 (1.010) | intergenic (+219/+107) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 202 total aligned reads displayed.
TTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/2182‑2326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcgTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA < NC_012417/1986‑1847 TTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCA > 1:305063/1‑141 CCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCAGACCATTCGACAAGTTGTGTGATT‑‑‑‑‑‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT > 3:253419/1‑141 CTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAG‑TTTTGGGAT‑‑‑‑T‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT > 4:51538/1‑141 TTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAG‑TTTTGGGAT‑‑‑‑T‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC > 2:514738/1‑141 AACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAG‑TTTTGGGAT‑‑‑‑T‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT > 2:199721/1‑141 ACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG > 1:588106/1‑141 AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATA > 3:299355/1‑141 TGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT > 2:348858/1‑141 GCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATCATCATATTTTTt > 2:667836/1‑140 CAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCT > 1:148396/1‑141 AGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT > 1:205394/1‑141 AGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTT > 3:325847/1‑141 AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCC > 2:425734/1‑141 AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCC > 2:574871/1‑141 AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC > 1:452316/1‑141 TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCT > 3:116687/1‑141 TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCT > 1:112499/1‑141 TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCT > 1:318268/1‑141 TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATCATCTTCATGATAATCATATTTTTCTTGCATCT > 3:314517/1‑141 TCGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC < 1:332389/139‑1 TCGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC > 2:332389/1‑139 CGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTC > 4:264528/1‑141 CGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTC > 1:473332/1‑141 CGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTC > 4:203697/1‑141 CGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTC > 3:212933/1‑141 CGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTC > 3:44035/1‑141 CGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT < 2:81481/108‑1 CGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTC < 2:267965/141‑1 CGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCG > 1:425138/1‑141 GGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCG > 4:287013/1‑141 GCATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTC < 1:510998/141‑1 TAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTC > 1:604744/1‑92 TAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTC < 2:604744/92‑1 TAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAA > 4:37800/1‑141 TAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAA > 3:75838/1‑141 TAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAA > 1:386279/1‑141 TAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTCCCATCTCGTCAAA > 1:400252/1‑141 GCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTA > 4:114928/1‑99 CGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAAATTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGC > 2:105435/1‑141 GAGCTATTAAGCCGA‑CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATC < 4:75838/141‑1 CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGATAAA > 4:101142/1‑141 CATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCG < 1:265970/115‑1 atcCGTC‑‑‑‑TGGAATTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCTTCAAAAGCATCATCTTTATAGAAAAAC < 2:9958/138‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAATGGTTCTTCTCAACATCAATAAATTGTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 2:130163/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:483011/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:630497/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 3:123786/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 3:239357/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:542834/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:698284/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 2:582382/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:727830/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC > 3:265844/1‑141 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 2:547875/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:312361/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 2:396679/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:260787/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 4:215728/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:2503/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:155241/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:145259/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAAAAAAAC < 2:506308/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAAAAAAAC < 2:623041/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAAa < 2:439866/141‑2 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAAC < 2:170611/141‑1 ATTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑CTCGTGTGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAC < 1:408882/141‑1 TTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAta > 3:278175/1‑139 TTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACA < 2:23053/141‑1 TTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACA < 2:205777/141‑1 TTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACA > 2:630833/1‑141 TTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACA > 2:366133/1‑141 TTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACA < 1:782100/141‑1 TTCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCACGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAAaa < 2:235699/141‑3 TCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 3:37741/141‑1 TCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 1:272365/141‑1 TCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 3:141228/141‑1 TCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 3:194513/141‑1 TCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 3:20584/141‑1 TCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 3:286006/141‑1 TCGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 3:264450/141‑1 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATTATCTTTATAGAAAAACAAA < 2:113773/141‑1 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA < 4:191447/141‑1 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 2:93343/1‑141 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 2:264049/1‑141 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 1:107058/1‑141 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA < 2:449424/141‑1 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 1:504045/1‑141 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAT > 2:678444/1‑130 CGTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTAGTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAAAAAA < 2:298289/141‑1 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCGACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTA < 2:56371/74‑1 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCGACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTA > 1:56371/1‑74 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 2:486689/1‑141 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 3:99544/1‑141 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 2:694575/1‑141 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 1:650790/1‑141 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTA < 2:720360/128‑1 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTT < 1:93902/127‑1 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT < 1:222482/78‑1 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTC > 2:254993/1‑65 GTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATATTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTC > 1:680388/1‑109 TTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/2182‑2326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcgTC‑‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA < NC_012417/1986‑1847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |