| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1873423 | 72 (0.760) | 6 (0.070) | 5/240 | 10.5 | 9.3% | intergenic (‑99/+651) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1873461 | 52 (0.610) | intergenic (‑137/+613) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTAAGTCATTAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1873272‑1873423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggaacaaaGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTTCGAATG < USA300TCH1516_ALE/1873461‑1873322 TTTAAGTCATTAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTTTTTTTGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAA > 2:117442/1‑141 TAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAA < 1:307617/141‑1 TAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAA < 3:154565/141‑1 ttgcccCATTCGAAATAGACTTCCTTTTGTCTGTAAGTTAAATTGTATTTTACATGAAAAGATATAAAGACTACAATATGATGTCAGAAAATGATAAAAAGGATCAAAGCAGCTATTTATGATTTGTGTCATATCAATAGC < 4:221401/135‑1 CCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATC < 2:191778/141‑1 ATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTT < 1:539644/141‑1 TCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTT < 3:293542/141‑1 TTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTAT < 2:356491/141‑1 TTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTAT < 2:356428/141‑1 AAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAA > 1:279025/1‑46 AAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAA < 2:279025/46‑1 AAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGT < 1:326535/141‑1 AAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGT < 4:300087/141‑1 AAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTAAAAATAAAAAAAAAAGGAAGT < 2:602694/141‑1 AAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTC > 1:526452/1‑141 GGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATT < 2:742782/141‑1 GAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTC < 3:35722/52‑1 GAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTC > 4:35722/1‑52 GAACAAAGCAGCTATTTATGAATTGTGACATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTg > 2:78463/1‑140 AAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTTCGAA > 1:125331/1‑141 AGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTTCGAATG > 3:223747/1‑141 TTTAAGTCATTAATGATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1873272‑1873423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggaacaaaGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGAAAAAAGGAAGTCGATTTCGAATG < USA300TCH1516_ALE/1873461‑1873322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |