New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 19741590 (1.050)8 (0.010) 5/258 55.7 0.55% intergenic (+207/+119) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2041 1448 (1.040)intergenic (+274/+52) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 189 total aligned reads displayed.

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1824‑1974
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacccttaacAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  NC_012417/2041‑1902
                                                                                                                                                                                                                                                                                                      
ttCTATTGGTGTTGTTGCTTAATTTTTTTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:301514/139‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:178541/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:329827/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:334711/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  2:191924/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  2:16085/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:344707/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:214703/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:169381/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        >  1:400970/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        >  1:141502/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  1:12830/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        >  1:507437/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCAAGAAAAAAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  2:132924/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  2:16475/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGAAAAAAAAAAAAAAAAATATGTTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAG                                                                                                                                                        <  2:519227/141‑1
 CCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGA                                                                                                                                                       <  1:172068/141‑1
 CCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGA                                                                                                                                                       <  1:348702/141‑1
 CCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGA                                                                                                                                                       <  1:553747/141‑1
 CCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGA                                                                                                                                                       <  1:312906/141‑1
  CTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAA                                                                                                                                                      >  1:38808/1‑141
   TATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAAC                                                                                                                                                     <  1:260786/141‑1
   TATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAAC                                                                                                                                                     >  1:467631/1‑141
   TATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAAC                                                                                                                                                     >  1:260206/1‑141
   TATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAAC                                                                                                                                                     >  2:269629/1‑141
   TATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAAC                                                                                                                                                     >  1:107814/1‑141
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCC                                                                                                                                                   <  2:272053/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCC                                                                                                                                                   <  2:288727/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCC                                                                                                                                                   <  2:314383/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCC                                                                                                                                                   <  2:474028/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCC                                                                                                                                                   <  2:478041/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCC                                                                                                                                                   <  1:516084/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCC                                                                                                                                                   <  2:52980/141‑1
      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCT                                                                                                                                                  >  1:282750/1‑141
      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCT                                                                                                                                                  >  1:520831/1‑141
      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTCTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCT                                                                                                                                                  <  1:447259/141‑1
        GTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTA                                                                                                                                                <  1:82001/141‑1
        GTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTA                                                                                                                                                <  2:364851/141‑1
        GTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTA                                                                                                                                                >  2:11210/1‑141
        GTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTA                                                                                                                                                <  1:394636/141‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGCCGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAA                                                                                                                                               <  1:342806/141‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:333358/141‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAA                                                                                                                                               >  1:16111/1‑141
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAA                                                                                                                                               >  2:373422/1‑141
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:413055/141‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAAATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:345552/141‑1
         TGTTGTAGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTAGACGAGAGGGAAGAAAAATATGGTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:319186/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC                                                                                                                                              >  2:69368/1‑141
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC                                                                                                                                              >  2:258149/1‑141
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC                                                                                                                                              >  2:326885/1‑141
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC                                                                                                                                              <  2:209619/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC                                                                                                                                              <  1:250700/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC                                                                                                                                              <  2:465263/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATAATGAAGCTAATCAAAAATAAACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC                                                                                                                                              >  1:227142/1‑141
                                                                        TGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTG                                                                                   <  1:117418/141‑1
                                                                             ATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTA                                                                           <  2:138906/141‑1
                                                                                    AGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGG                                                                    <  2:167883/141‑1
                                                                                    AGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGG                                                                    <  1:531176/141‑1
                                                                                          TAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTT                                                                 <  1:19400/141‑1
                                                                                                                                             cgcAACCCTTAACAATCCCAAGACTTGTCGACTGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTTTCAACATCAATAAATATTCTCAGCACAAATGCCTCATCTATTTTATA              <  2:307084/138‑1
                                                                                                                                              tGAACTCTTAACAATCCTAAATCTTGTCGATTTGTCGGTTTAATAGTTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATTAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTAT             <  2:311750/140‑1
                                                                                                                                               GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            <  2:380678/141‑1
                                                                                                                                                AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           >  2:200155/1‑141
                                                                                                                                                AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           <  1:53461/141‑1
                                                                                                                                                AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           >  1:177093/1‑141
                                                                                                                                                 ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          >  2:523659/1‑141
                                                                                                                                                 ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          >  2:66233/1‑141
                                                                                                                                                 ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          <  1:240530/141‑1
                                                                                                                                                 ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          <  2:283073/141‑1
                                                                                                                                                 ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCAGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          >  1:155292/1‑141
                                                                                                                                                  CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATACATGCTACGTCTATTTTTTATTATC         >  2:435121/1‑141
                                                                                                                                                  CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATC         >  1:268992/1‑141
                                                                                                                                                  CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATC         >  2:133858/1‑141
                                                                                                                                                   CCTTAACAATCCCAAAACTTGTTGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        >  1:101154/1‑141
                                                                                                                                                   CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTGTATTTTTTATTATCT        >  1:472826/1‑141
                                                                                                                                                   CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        <  1:545408/141‑1
                                                                                                                                                   CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        <  2:470126/141‑1
                                                                                                                                                   CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        >  1:59639/1‑141
                                                                                                                                                   CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        <  2:406613/141‑1
                                                                                                                                                    CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       >  2:83946/1‑141
                                                                                                                                                    CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  1:459856/141‑1
                                                                                                                                                    CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       >  2:205459/1‑141
                                                                                                                                                    CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       >  2:353494/1‑141
                                                                                                                                                    CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATAAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  1:415246/141‑1
                                                                                                                                                     TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGAGTCGTCTATTTTTTATTATCTTC      >  2:255090/1‑141
                                                                                                                                                      TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:107342/141‑1
                                                                                                                                                      TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:484134/141‑1
                                                                                                                                                      TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:238225/141‑1
                                                                                                                                                       AACGATCCCATAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT    <  2:123571/141‑1
                                                                                                                                                       AACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT    >  2:179753/1‑141
                                                                                                                                                        ACATTCCTAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   <  1:144725/141‑1
                                                                                                                                                        ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATACATGCGTCGTCTGTTTTTTATTATCTTCATG   <  2:568474/141‑1
                                                                                                                                                        ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   <  2:432283/141‑1
                                                                                                                                                        ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   <  1:365267/141‑1
                                                                                                                                                        ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   <  2:471000/141‑1
                                                                                                                                                        ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   >  1:54788/1‑141
                                                                                                                                                        ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   >  1:431250/1‑141
                                                                                                                                                        ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   <  1:491765/141‑1
                                                                                                                                                         CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  1:20168/141‑1
                                                                                                                                                         CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  >  1:542632/1‑141
                                                                                                                                                                                                                                                                                                      
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AAGAACCCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1824‑1974
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacccttaacAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  NC_012417/2041‑1902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.