New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 4399155 (0.980)8 (0.010) 4/258 13.4 1.0% intergenic (+364/‑101) USA300HOU_pUSA300HOUMR0006/cadR hypothetical protein/cadmium binding protein
?NC_012417 = 1963 1436 (1.030)intergenic (+196/+130) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 123 total aligned reads displayed.

GTGTCTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/4250‑4399
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaagggttc‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  NC_012417/1963‑1824
                                                                                                                                                                                                                                                                                                        
GTGTCTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGT                                                                                                                                                             >  1:299395/1‑141
GTGTCTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGT                                                                                                                                                             >  1:198246/1‑141
   gCTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAA                                                                                                                                                          >  1:538995/2‑141
    CTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAG                                                                                                                                                         >  1:26058/1‑141
    CTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAG                                                                                                                                                         >  2:21709/1‑141
    CTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTCTGGGATTGTTAAG                                                                                                                                                         >  1:406914/1‑141
     TCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGG                                                                                                                                                        <  2:40058/141‑1
     TCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGG                                                                                                                                                        <  1:246966/141‑1
      CCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGG                                                                                                                                                       >  1:558637/1‑141
      CCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGG                                                                                                                                                       >  2:106498/1‑141
      CCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGG                                                                                                                                                       >  1:495426/1‑141
      CCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGG                                                                                                                                                       >  2:138354/1‑141
       CATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGT                                                                                                                                                      <  2:480766/141‑1
       CATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGT                                                                                                                                                      <  2:331799/141‑1
                                                              AACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGG‑‑‑CTCAACGTCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTA                                                                                            >  1:19400/1‑141
                                                                 CCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT                                                                                      >  1:531176/1‑141
                                                                 CCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT                                                                                      >  2:167883/1‑141
                                                                        TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGAT                                                                               >  2:138906/1‑141
                                                                         AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTA‑‑‑TT‑‑‑CTAAAACTAAATACCTCTTATCGGCATAATTGCGTAGTCTATTTTTTATTATCTTCTAGATA                                                                              >  1:312064/1‑141
                                                                            CTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT                                                                     >  2:63622/1‑141
                                                                                CAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑CGAGGCTCAACGTCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCA                                                                          >  1:117418/1‑141
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTTTATTTTTGATTAGCTTCATTATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  1:227142/141‑1
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  1:250700/1‑141
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  1:22586/141‑1
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:526820/1‑141
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:209619/1‑141
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:268545/1‑141
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:27009/1‑141
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  2:313874/141‑1
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  2:69368/141‑1
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:465263/1‑141
                                                                                                                                           GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAACAAAAAGTAAGCAACAAC            <  2:48594/141‑1
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATTTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:345552/1‑141
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           <  2:373422/141‑1
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  1:508676/1‑141
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           <  1:448361/141‑1
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:333358/1‑141
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           <  1:16111/141‑1
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:67994/1‑141
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAACCATATTTTTCTTCCCTCTCGTCTAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCTACAACA           >  2:319186/1‑141
                                                                                                                                            TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGGCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  1:342806/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:524300/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          <  2:11210/141‑1
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  2:323846/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:34388/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:540795/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  2:135408/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  2:364851/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          <  2:409207/141‑1
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:160641/1‑141
                                                                                                                                             TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:394636/1‑141
                                                                                                                                               AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAGAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  1:447259/1‑141
                                                                                                                                               AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  2:167829/1‑141
                                                                                                                                               AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  2:119161/1‑141
                                                                                                                                               AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  2:344580/1‑141
                                                                                                                                               AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        <  1:520831/141‑1
                                                                                                                                                GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:288727/1‑141
                                                                                                                                                GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:272053/1‑141
                                                                                                                                                GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  1:14410/1‑141
                                                                                                                                                GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:52980/1‑141
                                                                                                                                                GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:314383/1‑141
                                                                                                                                                GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:474028/1‑141
                                                                                                                                                GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:478041/1‑141
                                                                                                                                                 GGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAAT      >  1:234641/1‑141
                                                                                                                                                 GGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAAT      >  1:441984/1‑141
                                                                                                                                                 GGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAAT      >  1:47153/1‑141
                                                                                                                                                 GGTTC‑‑‑TA‑‑‑CTCAACATCAATAAAATTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAACAAAAAGTAAGCAACAACACCAAT      <  2:470617/141‑1
                                                                                                                                                  GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  1:260206/141‑1
                                                                                                                                                  GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     >  1:260786/1‑141
                                                                                                                                                  GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  1:107814/141‑1
                                                                                                                                                  GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  1:392736/141‑1
                                                                                                                                                  GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  2:269629/141‑1
                                                                                                                                                   TTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAG    <  1:38808/141‑1
                                                                                                                                                   TTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTAAAAAAAAAACAAAAAGTAAGCAACAACACCAATAG    <  2:107096/141‑1
                                                                                                                                                    TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:312906/1‑141
                                                                                                                                                    TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:172068/1‑141
                                                                                                                                                    TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:553747/1‑141
                                                                                                                                                    TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGAATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:5177/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTTTTTTCTTGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:132924/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCTTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:16475/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:81366/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:334711/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:12830/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  1:141502/141‑1
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:165501/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:169381/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:178541/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:196951/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:329827/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  2:255133/141‑1
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:344707/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:358681/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  1:400970/141‑1
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  1:507437/141‑1
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:552945/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:16085/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAAAAAAATTAAGCAACAACACCAATAGaa  >  1:301514/1‑139
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATACAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:1900/1‑141
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  2:254565/141‑1
                                                                                                                                                     C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAAACATATTTTTTTTTTTTTTTTTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:519227/1‑141
                                                                                                                                                                                                                                                                                                        
GTGTCTCCATGTCTACGCATAGACACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/4250‑4399
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaagggttc‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  NC_012417/1963‑1824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.