| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 748,209 | T→C | 5.2% | A68A (GCT→GCC) | oxyR → | Hydrogen peroxide‑inducible genes activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 748,209 | 0 | T | C | 5.2% | 425.4 / 8.6 | 146 | A68A (GCT→GCC) | oxyR | Hydrogen peroxide‑inducible genes activator |
| Reads supporting (aligned to +/- strand): ref base T (62/76); new base C (4/4); total (66/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 148 total aligned reads displayed.
CTGAAATTTTATATATATCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAGCCTATATAATGC > USA300TCH1516_ALE/748070‑748349 | cTGAAATTTTATATATATCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTc < 2:27574/141‑1 (MQ=255) caTTTTATATGTATCACAACATTCTGTAACACAAAGACTTAAAGCCATTGAAAATGCTTCTCGAGTAGATATGTATAAAAAAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGa < 2:1034159/140‑1 (MQ=255) aTTTTATATATATCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGAc > 4:353366/1‑141 (MQ=255) ttATATATATCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTAGTGACATg < 1:230342/141‑1 (MQ=255) ttATATATATCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTAAGCATGCTCGTGACATg > 2:870158/1‑141 (MQ=255) atatatCTCCACCTGATTTTACAAAAAGAATAAAAGCTATTTAAAATGCTTTTGGAGTAGATATTTTTATCAAAAAAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGa < 2:798500/141‑1 (MQ=255) atatatCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCCCGTGACATGTTGa > 2:498971/1‑141 (MQ=255) atatatCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTAATAAAAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGa < 2:367225/141‑1 (MQ=255) tcAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAagaga < 3:200009/141‑1 (MQ=255) ccTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTTTTATAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCCCGTGACATGTTGAAAAGAGAGCGa > 2:477030/1‑141 (MQ=255) ccTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACATCTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGa < 1:1003235/141‑1 (MQ=255) ccTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGa < 1:223823/141‑1 (MQ=255) ccTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGa < 3:95808/141‑1 (MQ=255) ccTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCCCGTGACATGTTGAAAAGAGAGCGa > 2:536022/1‑141 (MQ=255) ctgctgTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGat < 4:310627/141‑1 (MQ=255) tgctgTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGatt > 2:327086/1‑141 (MQ=255) gctgTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGatta > 1:354037/1‑141 (MQ=255) gctgTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGatta > 2:829052/1‑141 (MQ=255) tgTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATTATTATTTAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTTAAAAGAGAGCGattatt > 2:1738/1‑141 (MQ=255) gTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTAttt > 2:303039/1‑141 (MQ=255) gTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTAttt > 2:838305/1‑141 (MQ=255) gTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATCAttt < 1:543251/141‑1 (MQ=255) acaAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGa < 2:321021/141‑1 (MQ=255) acaAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGa < 2:1029848/141‑1 (MQ=255) acaAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGa < 1:430912/141‑1 (MQ=255) acaAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCCCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGa < 2:437785/141‑1 (MQ=255) caAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGAc < 2:610200/141‑1 (MQ=255) caAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGAc > 4:303753/1‑141 (MQ=255) gACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACaaaa > 1:617344/1‑141 (MQ=255) tAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGc > 2:311372/1‑141 (MQ=255) aaaaGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCa > 1:504348/1‑141 (MQ=255) gCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGca > 4:146123/1‑141 (MQ=255) aTTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACat < 1:643565/141‑1 (MQ=255) aTTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACat < 1:871341/141‑1 (MQ=255) ttGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACata > 1:625087/1‑141 (MQ=255) ttGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACata > 4:179163/1‑141 (MQ=255) gAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGAATGCCCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATAtt > 1:597602/1‑141 (MQ=255) gAAAATGCATTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTCTTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTCTTTGATAAAATGAAGGCCCATAtt > 2:50792/1‑141 (MQ=255) aaaaTGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTTACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTg > 1:46029/1‑141 (MQ=255) aaaTGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTgg > 3:291368/1‑141 (MQ=255) aaaTGCTTTTGGACTAGATATTTTTAACAAAAAAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTgg < 4:380442/141‑1 (MQ=255) aTGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGgtg < 1:1052772/141‑1 (MQ=255) tGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGgtga > 1:733950/1‑141 (MQ=255) gCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGgtgaa > 1:454606/1‑141 (MQ=255) ctattGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAAGTGAAGGATCAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAGAATGCAGGCACATATTGgtgaag > 2:149483/4‑141 (MQ=255) cTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGgtgaag < 3:147533/141‑1 (MQ=255) cTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGAAGACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGgttaag < 1:576222/141‑1 (MQ=255) cTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTCATTACAAAAACTGAAGAAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGgtgaag < 1:712613/141‑1 (MQ=255) ttGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGgtgaagtga > 1:87950/1‑141 (MQ=255) aGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAAc > 3:437933/1‑141 (MQ=255) aGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAAc > 2:331010/1‑141 (MQ=255) aGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAAc > 1:654090/1‑141 (MQ=255) aGATATTTTTATAAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAAc < 2:430493/141‑1 (MQ=255) gATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACa > 1:796778/1‑141 (MQ=255) atatTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACaa < 3:110648/141‑1 (MQ=255) atatTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTAAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACaa < 3:317338/141‑1 (MQ=255) tatTTTTATAAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAat < 2:278481/141‑1 (MQ=255) atTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAata > 1:679292/1‑141 (MQ=255) tttttATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAatat < 2:183245/141‑1 (MQ=255) ttATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCaa > 1:885699/1‑141 (MQ=255) ttATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCaa < 2:986769/141‑1 (MQ=255) tATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAAt < 1:182773/141‑1 (MQ=255) tCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCg < 1:132139/141‑1 (MQ=255) aGAAAAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCggg < 2:203923/141‑1 (MQ=255) cAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGtt < 1:246288/141‑1 (MQ=255) aaaaaaCAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGttct < 2:574219/141‑1 (MQ=255) aaaaaaCAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGttct < 1:786965/141‑1 (MQ=255) aaaaaCAATTGATTACAACAACTGAAGGAACCATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACCTATTGGTGAAGTGAATGGAACAATATCAATCGGGTGttctt < 4:224212/141‑1 (MQ=255) aaaaaCAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGttctt < 4:418868/141‑1 (MQ=255) aaaCAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTtcttct < 1:601972/141‑1 (MQ=255) aaCAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTcttctt > 1:321618/1‑141 (MQ=255) aaCAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTcttctt > 1:937679/1‑141 (MQ=255) aaTTGCTTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGa < 1:809931/141‑1 (MQ=255) aaTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGa < 1:617635/141‑1 (MQ=255) aaTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGa < 1:645706/141‑1 (MQ=255) agtGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAAGCGGGTGTGCTTCTTTGAt < 3:148796/139‑1 (MQ=255) aTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGAt > 3:186670/1‑141 (MQ=255) aTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGAt < 1:1019760/141‑1 (MQ=255) aTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGAt > 1:125334/1‑141 (MQ=255) aTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGAt < 2:315101/141‑1 (MQ=255) aTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGAt > 1:993415/1‑141 (MQ=255) aTTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGAt < 2:838837/141‑1 (MQ=255) tGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTg > 2:21391/1‑141 (MQ=255) gATTACAACAACTGAAGGAACAATGATTATTGAGCATGCCCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATGGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTgg < 1:875580/141‑1 (MQ=255) acaacTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAAcc > 1:566794/1‑141 (MQ=255) aaGGAACAAGGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTc < 2:254756/141‑1 (MQ=255) aGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTcc < 1:829052/141‑1 (MQ=255) ggAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCt > 2:902793/1‑141 (MQ=255) aaCAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGa < 4:276358/141‑1 (MQ=255) aCAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGaa < 1:645631/141‑1 (MQ=255) aCAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGaa < 2:890495/141‑1 (MQ=255) aaTGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCCATCGGGTGCTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGt > 2:747736/1‑141 (MQ=255) ttattGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGa > 1:655430/1‑141 (MQ=255) tattGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACACACCTTACTTCCTGAAGTTTTAAg > 2:439699/1‑141 (MQ=255) ttGAGCATGCTCGTGACATGTTGAAAAGAGGGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAGcc < 2:63339/141‑1 (MQ=255) ttGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAGcc > 1:627926/1‑141 (MQ=255) tGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAGCCt < 2:132217/141‑1 (MQ=255) gAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAGCCta < 1:738720/141‑1 (MQ=255) aGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAAACtat > 4:353503/1‑141 (MQ=255) tCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAGCCTATATAATGc < 1:311372/141‑1 (MQ=255) | CTGAAATTTTATATATATCTCAACCTGCTGTTACACAAAGACTAAAAGCTATTGAAAATGCTTTTGGAGTAGATATTTTTATCAGAACAAAAAAACAATTGATTACAACAACTGAAGGAACAATGATTATTGAGCATGCTCGTGACATGTTGAAAAGAGAGCGATTATTTTTTGACAAAATGCAGGCACATATTGGTGAAGTGAATGGAACAATATCAATCGGGTGTTCTTCTTTGATTGGACAAACCTTACTTCCTGAAGTTTTGAGCCTATATAATGC > USA300TCH1516_ALE/748070‑748349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |