| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1994322 = | NA (NA) | 3 (0.030) | 3/246 | NT | 18.3% | intergenic (‑429/‑64) | USA300HOU_RS09935/USA300HOU_RS11675 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1994387 = | 14 (0.110) | coding (2/1362 nt) | USA300HOU_RS11675 | hypothetical protein | |||||
GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTtgtgta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1994460‑1994322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTGT > USA300TCH1516_ALE/1994387‑1994532 gatGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG < 4:392647/138‑1GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG > 4:450574/1‑141GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG > 4:208417/1‑141GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG < 1:602276/141‑1GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG > 1:998191/1‑141GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG < 2:808189/141‑1GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTCTAAATTATAGAGGCAATTGCGCTTTTTG < 4:363649/141‑1 ACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGT > 2:867789/1‑141 CGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTG < 1:987152/141‑1 CGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTG < 2:8055/141‑1 GTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGT < 1:636669/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA < 1:222681/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA < 3:10085/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA < 2:798846/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA < 2:498048/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA > 1:547093/1‑141 ACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGAC > 1:10799/1‑141 GGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAA > 2:337102/1‑128 GGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAA < 1:337102/128‑1 TGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTACTGCTGTACTAACGTATAAGCCTTCGGCCTGTTATT > 2:949203/1‑141 GTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTG < 1:585933/141‑1 GTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTG > 4:327571/1‑141 GTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGGCTTCGGCCTGTTATTGTT > 2:907072/1‑141 GTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTT > 1:624539/1‑141 GTAATGATACCTTAGAATTACTAAGAACAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTT > 2:528597/1‑141 TAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTG < 1:932999/141‑1 AATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTGT > 2:706749/1‑141 AATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTGT > 4:188742/1‑141 GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTtgtgta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1994460‑1994322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTGT > USA300TCH1516_ALE/1994387‑1994532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |