| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 34 = | 553 (0.420) | 36 (0.030) | 18/146 | NT | 5.1% | intergenic (–/‑198) | –/repA | –/replication protein A |
| ? | CP000731 | 65 = | 830 (0.690) | intergenic (–/‑167) | –/repA | –/replication protein A | |||||
Only 100 of 364 total aligned reads displayed.
TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:3565047/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:6575057/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:6127894/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:1719578/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:5239453/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:474654/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:4421109/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:3612839/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:4985319/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:301484/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:724111/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:6590520/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 1:2853660/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 1:4871197/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 2:4369923/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGGTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 2:6751860/91‑1 TATTCATTATATAATACAAGTATCGAAAATTAGATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG > 2:716059/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:3738521/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:1072399/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:1380185/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:2650747/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:3886718/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:4647714/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:5067827/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:5897301/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 1:6864913/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 1:5992577/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 2:3583809/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 1:151029/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 2:6345430/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 2:1945792/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 2:5547293/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 1:769554/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 2:1885410/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 2:3055547/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 2:6320871/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 2:4811086/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGCTGGGGT > 1:2567085/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 1:2641206/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:2238958/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:1197949/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 1:1554676/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 2:4009724/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 1:2283063/91‑1 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAATCGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT < 1:865775/91‑1 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 1:3720695/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 1:2740424/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 1:3521235/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 2:450153/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTAGTACCAGTAGTTCGGGTTT > 1:5836808/1‑91 TCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:2170791/1‑68 GAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 1:4963927/70‑1 TAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCCGTAGTTGGGGTTTGGTAATAAAACGATTAGAAACTGTTTATT > 1:6796360/1‑91 CAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAT > 1:4538362/1‑91 TTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTA > 2:3307793/1‑91 TACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATA > 2:6908706/1‑91 CCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAAT > 1:4107172/1‑91 ACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATCATGAATAATA > 1:6970798/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 2:1455828/1‑91 TTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTT > 2:1479377/1‑91 TTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTT > 2:4102693/1‑91 TACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTA > 2:1336693/1‑91 TACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTA > 2:4294192/1‑91 CCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGT > 1:4241401/1‑91 TTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCA > 1:1281706/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:2854958/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:6452063/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:5408434/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:1714901/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:1774931/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:2228421/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:1899314/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:6097903/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:2429104/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:5421564/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:5096157/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:110501/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT > 2:4947537/1‑91 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 1:1019455/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:5229857/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT > 1:592240/1‑91 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:3383825/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCA > 2:6700506/1‑84 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 2:836957/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA > 1:1149973/1‑91 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA > 1:3125392/1‑91 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 2:2100690/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 1:6652524/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 2:4045397/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 1:320553/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA > 2:1021407/1‑91 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 2:3396156/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 1:5488889/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 2:3211166/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATATATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 2:57813/91‑1 TTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAT < 1:3784906/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:6283722/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC < 1:5719334/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC < 2:2283063/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:3448159/1‑91 TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |