| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 515911 = | NA (NA) | 17 (0.050) | 12/146 | NT | NA | intergenic (+3979/‑2784) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 515928 = | NA (NA) | intergenic (+3996/‑2767) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 375 total aligned reads displayed.
CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/516007‑515911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacaatGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > USA300TCH1516_ALE/515928‑516017 CTCACCCCGGCATTCTCACTTCTAAGCGCGCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 1:605300/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 1:1037690/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 1:6379177/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 1:4918326/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 2:1324855/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 2:1971842/91‑1 TCACACCTGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 1:5556575/91‑1 TCACACCGGCATTCTCACTTCTACGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 2:311383/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 1:130955/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 1:52298/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG > 1:4645372/1‑91 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG > 2:409061/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 2:5123837/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 2:4795919/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 1:2431311/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 1:4268477/1‑91 ACACCGGCATTCTCACTTCTAAGCGCTCCCCATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGAC > 2:3793173/1‑91 ACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGAC > 1:5958193/1‑91 CACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACA > 2:1426109/1‑91 CACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTACAAAGGACA > 2:6637713/1‑91 ACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAA > 1:1138302/1‑91 ACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAA > 2:261181/1‑91 ACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAA > 1:5191889/1‑91 cgGGCATTCTCACTTCTAAGCGCTCTACATGTCCGTACGATCATGCTTCAACGCCAATAGAACGCTCTCCTACCATTGTCCAAAGGACAAT > 2:5836311/3‑91 CCGGCATTCTTACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGCACGCTCTCCTACCATTGTCCAAAGGACAAT < 2:5550846/91‑1 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT > 2:3139034/1‑91 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT < 1:14855/91‑1 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT > 2:3653816/1‑91 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT < 2:6342663/91‑1 GCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCTTTGGACAATGGT < 1:6471874/91‑1 TCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGGTCTCCTACCATTGTCCTTTGGACAATGGTAGGA < 1:6947951/91‑1 ACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCTTTGGACAATGGTAGGAGAGC < 1:261407/91‑1 TAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT < 1:820661/91‑1 ACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTG < 1:685346/91‑1 TTGTCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGT > 2:1034241/1‑91 TCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTG > 1:5027213/1‑91 TCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTG > 2:6803111/1‑91 CCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGA > 2:4305512/1‑91 CCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGA > 1:4444871/1‑91 aAAAGGACAATGGGAGGAGAGCGTTCTAAGGGCGTTGAAGCAAGAGCGTAAGGACATGTGGAGCGAGTAGAAGTGAGACTGCTGGTGGGAG > 2:4214735/2‑91 CAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAG > 2:1582132/1‑91 CAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAG > 2:5479175/1‑91 CAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAG > 1:668448/1‑91 CAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAG > 1:5491134/1‑91 AAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGT > 1:2047027/1‑91 AAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGT > 2:4495687/1‑91 AAAGGACAATGGAAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCATAGAAGTGAGAATGCCGGTGTGAGT > 2:6504142/1‑91 AAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTA > 1:1867070/1‑91 AGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAG > 1:2502034/1‑91 AGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAG > 1:5308042/1‑91 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 1:1366350/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 1:3215564/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC > 1:3393092/1‑91 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 1:895534/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC > 2:6150102/1‑91 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 2:5972426/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 1:3625597/91‑1 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG < 1:2323624/91‑1 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG > 2:862223/1‑91 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG < 2:1613387/91‑1 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG < 1:4013974/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:1121471/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:3235158/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:3027220/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:5885904/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:6213502/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA > 1:3280706/1‑91 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:2512332/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:1530294/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:4171269/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:1945850/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA > 2:1857464/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 1:2101347/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 2:6133646/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 2:3472041/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 1:2734141/1‑91 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA > 1:1245088/1‑91 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 2:3006647/91‑1 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA > 2:2382318/1‑91 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA > 1:1003725/1‑91 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 2:176286/91‑1 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTATGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTTAGTAGCGAAAG < 2:6966608/91‑1 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:2813256/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:601929/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:5764865/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:4627469/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:3890688/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:1555303/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 2:5222755/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 2:244834/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 2:2758193/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 1:1573527/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 2:207857/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 1:3735509/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 1:3823412/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 2:4869879/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 2:2263597/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA < 1:6566256/91‑1 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 2:395803/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTAAGTAGCGAAAGA > 2:4629295/1‑91 CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/516007‑515911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacaatGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > USA300TCH1516_ALE/515928‑516017 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |