| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 431147 | 290 (0.810) | 16 (0.050) | 11/140 | NT | 5.9% | intergenic (+25/+56) | nfrA/tcyP | NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP |
| ? | USA300TCH1516_ALE | = 431177 | 260 (0.830) | intergenic (+55/+26) | nfrA/tcyP | NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP | |||||
Only 100 of 127 total aligned reads displayed.
GAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/431048‑431147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccg‑cccccTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGTT < USA300TCH1516_ALE/431177‑431088 GAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAA < 2:332639/91‑1GAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAA > 2:4869901/1‑91GAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAA < 1:2411811/91‑1GAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAA > 2:6068997/1‑91GAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAACACAGCGATAGCAAGATACCAAAATAA > 1:2287699/1‑91 AGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAAC > 1:7004547/1‑91 AGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAAC > 2:5176848/1‑91 GATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACC > 2:2196260/1‑91 GATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACC > 2:125786/1‑91 GATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACC < 1:972189/91‑1 ATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCC < 1:5894850/91‑1 ATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCC < 1:2437435/91‑1 ATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCC < 2:5031650/91‑1 ATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCC < 2:1550039/91‑1 TGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCc > 2:3521986/1‑90 TGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG < 2:3221672/91‑1 TGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG > 1:57988/1‑91 TGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG < 2:3222204/91‑1 TGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG < 1:4031536/91‑1 TGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG < 2:713288/91‑1 TGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG < 2:5424693/91‑1 GTTCCTAGTGAACAAAGCAAGATTTGATATGTTAAAAAAATTGAAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑C < 2:6598615/91‑1 GTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑C > 2:1943953/1‑91 GTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑C < 1:1565152/91‑1 GTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑C > 2:2353513/1‑91 GTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAAAAAATGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑C < 2:4263035/91‑1 TTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CC < 2:5077349/91‑1 TTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CC > 1:194603/1‑91 TTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CC < 1:6421513/91‑1 TTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CC > 2:5423719/1‑91 TTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CC > 1:6262041/1‑91 TTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CC > 2:4332585/1‑91 TCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCC < 2:5933237/91‑1 TCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCC > 1:643901/1‑91 TCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCC > 1:5216817/1‑91 TCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGAGACCAAAATAACCCG‑CCC < 1:5310652/91‑1 CTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCC > 2:1011697/1‑91 CTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCC < 1:392291/91‑1 CTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCC < 1:2600898/91‑1 CTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCC > 1:1979372/1‑91 AGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG < 1:5542898/71‑1 AGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG > 2:5542898/1‑71 AGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCCTCTAGCTATACTTATCATTT < 1:668083/91‑1 GATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTATACTTATCATTT < 1:3093545/91‑1 GATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCCTCTAGCTATACTTTTCATTTT < 1:1846112/91‑1 GATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCCTCTAGCTATACTTATCATTTT < 1:3915133/91‑1 ATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTATACTTATCATTTT < 1:4669823/91‑1 GTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCGAAATAGCCCGCCCCCCTCTAGCTATACTTATCATTTTAAGC < 1:6920388/91‑1 TAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAG < 1:5476380/91‑1 GAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTATACTTATCATTTTAAGCTAGA < 1:5154417/91‑1 GAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAG < 1:6593731/91‑1 TTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTATACTTATCATTTTAAGCTAG > 1:2201098/1‑84 TTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTATACTTATCATTTTAAGCTAG < 2:2201098/84‑1 ACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGC < 2:4861585/91‑1 GCGATAGCAAGATACCAAAATAACCCG‑CCCTCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTAT < 2:6922492/91‑1 ACCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTT < 1:2099465/91‑1 ACCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTT > 1:484600/1‑91 ACCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTT < 2:2707361/91‑1 ACCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTT > 2:6313916/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTACGCCTGATTTTTG > 2:4622757/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 2:4905088/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 2:4864356/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 2:4458638/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG < 1:3229731/91‑1 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 1:3872064/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 1:2108349/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 2:3192806/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG < 2:6539303/91‑1 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 1:1655689/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 1:6228161/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTG > 1:1094293/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTAT < 1:5048187/76‑1 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTAT > 2:5048187/1‑76 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTAATAAGCCTGATTTTTG > 2:5388086/1‑91 CCCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGC < 2:2461781/71‑1 CCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGC > 1:4928206/1‑91 CCG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGC < 1:5941606/91‑1 CCG‑CCACCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGC > 2:6840742/1‑91 CG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCA > 2:157406/1‑91 CG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCA < 2:3710165/91‑1 CG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCA > 2:1086604/1‑91 CG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCA < 1:6320847/91‑1 CG‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTATATTAAGCCTGATTTTTGCA < 1:6382115/91‑1 G‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAA < 1:3062978/91‑1 G‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAA > 1:3996456/1‑91 G‑CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAA < 1:2925975/91‑1 CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAAT > 2:5122511/1‑91 CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAAT < 1:2545473/91‑1 CCCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAAT > 2:2540548/1‑91 CCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATT < 2:3576096/91‑1 CCCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATT > 1:5546268/1‑91 CCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTG > 1:1165168/1‑91 CCCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTG < 1:270748/91‑1 CCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGT < 1:4466623/91‑1 CCTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGT > 1:1704428/1‑91 CTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTGTCGCTGTATTAAGCCTGATTTTTGCAATTGTT < 1:2013779/91‑1 CTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGTT > 2:2410938/1‑91 CTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGTT < 1:5271799/91‑1 CTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGTT < 1:5272855/91‑1 CTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGTT < 1:2979934/91‑1 GAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCG‑CCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/431048‑431147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccg‑cccccTCTAGCTATACTTATCATTTTAAGCTAGAGGGGGGCGGGTTATTTTGGTATCTTGCTATCGCTGTATTAAGCCTGATTTTTGCAATTGTT < USA300TCH1516_ALE/431177‑431088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |