mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 161,068 | 0 | A | C | 40.9% | 15.3 / 11.6 | 44 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | CP009273 | 2,170,734 | 0 | G | T | 37.0% | 49.5 / 97.3 | 146 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,908 | 0 | T | G | 29.9% | 183.1 / 32.9 | 127 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 838,652 | 0 | T | G | 27.4% | 222.6 / 24.7 | 117 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,998,333 | 0 | T | A | 25.9% | 239.5 / 27.1 | 109 | Q271H (CAA→CAT) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 2,178,926 | 0 | C | A | 24.0% | 248.4 / 14.4 | 129 | intergenic (‑146/+77) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 2,998,314 | 0 | C | A | 22.3% | 218.2 / 13.1 | 112 | V278F (GTT→TTT) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 2,170,746 | 0 | C | A | 22.1% | 272.1 / 17.4 | 155 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,598 | 0 | C | G | 21.1% | 259.7 / 11.1 | 98 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,178,925 | 0 | T | A | 20.3% | 313.8 / 15.0 | 128 | intergenic (‑145/+78) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3399761 = | 201 (1.290) | 3 (0.020) | 3/244 | 9.6 | 1.6% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | CP009273 | = 3399757 | 189 (1.330) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 6 (0.040) +AATTC |
3/258 | 9.9 | 3.9% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 155 (0.990) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | 1955068 = | 151 (0.970) | 3 (0.020) | 3/264 | 10.0 | 1.7% | coding (750/1734 nt) | argS | arginyl‑tRNA synthetase |
| ? | CP009273 | = 1955203 | 197 (1.280) | coding (885/1734 nt) | argS | arginyl‑tRNA synthetase | |||||
| * | ? | CP009273 | 532702 = | 149 (0.960) | 3 (0.020) | 3/262 | 10.0 | 1.9% | coding (661/879 nt) | glxR | tartronate semialdehyde reductase, NADH‑dependent |
| ? | CP009273 | = 1691199 | 167 (1.100) | coding (111/591 nt) | uidR | transcriptional repressor | |||||
| * | ? | CP009273 | 2481136 = | 106 (0.680) | 3 (0.020) | 3/266 | 10.1 | 2.2% | coding (3284/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| ? | CP009273 | = 3433872 | 160 (1.030) | coding (517/990 nt) | rpoA | RNA polymerase, alpha subunit | |||||
| * | ? | CP009273 | 725842 = | NA (NA) | 3 (0.020) | 3/266 | 10.1 | 2.6% | coding (804/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 1113806 = | 114 (0.730) | coding (127/576 nt) | yceI | secreted protein | |||||
| * | ? | CP009273 | 475096 = | 133 (0.850) | 3 (0.020) | 3/268 | 10.1 | 2.3% | coding (279/552 nt) | maa | maltose O‑acetyltransferase |
| ? | CP009273 | = 476149 | 120 (0.770) | coding (16/375 nt) | tomB | Hha toxicity attenuator; conjugation‑related protein | |||||