mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 46.9% | 17.4 / 68.9 | 98 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,172,748 | 0 | C | T | 28.5% | 238.9 / 118.8 | 137 | H526Y (CAC→TAC) | rpoB | RNA polymerase, beta subunit |
| * | CP009273 | 104,042 | 0 | A | T | 27.8% | 80.5 / 13.0 | 37 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 4,008,442 | 0 | T | G | 25.8% | 277.8 / 28.1 | 128 | F677C (TTT→TGT) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| * | CP009273 | 2,178,908 | 0 | T | G | 24.3% | 153.2 / 11.8 | 74 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 838,659 | 0 | C | G | 23.5% | 238.2 / 18.7 | 101 | A291G (GCC→GGC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,173,034 | 0 | C | A | 22.4% | 288.9 / 99.6 | 152 | S621Y (TCC→TAC) | rpoB | RNA polymerase, beta subunit |
| * | CP009273 | 155,588 | 0 | C | A | 21.7% | 123.3 / 16.3 | 61 | C9F (TGC→TTC) | pcnB | poly(A) polymerase |
| * | CP009273 | 2,222,692 | 0 | G | C | 21.3% | 227.3 / 36.0 | 89 | intergenic (+148/+225) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | CP009273 | 2,222,669 | 0 | T | A | 20.0% | 186.4 / 12.4 | 92 | intergenic (+125/+248) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1930973 = | 68 (0.630) | 23 (0.220) | 18/264 | 3.0 | 25.6% | coding (65/870 nt) | yebK | putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 3576790 = | NA (NA) | intergenic (+12/‑53) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
| * | ? | CP009273 | = 287112 | NA (NA) | 21 (0.200) | 16/260 | 3.4 | 24.4% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | CP009273 | 1930975 = | 66 (0.620) | coding (67/870 nt) | yebK | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 1930983 | 63 (0.580) | 18 (0.170) | 13/268 | 4.2 | 22.2% | coding (75/870 nt) | yebK | putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | = 1046001 | 87 (0.810) | 17 (0.160) | 12/268 | 4.5 | 18.5% | intergenic (+15/+418) | insB1/cspH | IS1 transposase B/stress protein, member of the CspA‑family |
| ? | CP009273 | = 1930983 | 63 (0.580) | coding (75/870 nt) | yebK | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 1045234 = | 67 (0.620) | 16 (0.150) | 11/264 | 4.7 | 19.5% | intergenic (‑34/‑55) | gfcA/insA | O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA |
| ? | CP009273 | 1930975 = | 66 (0.620) | coding (67/870 nt) | yebK | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 2811301 | 127 (1.180) | 9 (0.100) | 6/228 | 5.8 | 8.0% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 99 (1.080) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | 286345 = | NA (NA) | 6 (0.060) | 5/268 | 7.1 | 8.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | CP009273 | = 1930983 | 63 (0.580) | coding (75/870 nt) | yebK | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 1716873 = | 121 (1.120) | 3 (0.030) | 3/246 | 7.8 | 2.6% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | CP009273 | = 1716869 | 113 (1.140) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | CP009273 | 2723096 = | NA (NA) | 3 (0.030) | 3/264 | 8.2 | 2.0% | noncoding (1421/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | = 3014572 | 152 (1.410) | coding (674/780 nt) | ygfM | putative oxidoreductase | |||||
| * | ? | CP009273 | 2346638 = | 80 (0.740) | 3 (0.030) | 3/266 | 8.2 | 3.2% | coding (513/1629 nt) | glpA | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding |
| ? | CP009273 | = 2361586 | 100 (0.930) | coding (69/1983 nt) | arnA | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase | |||||