mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 33,849 | C→A | 6.2% | T1011T (ACC→ACA) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 70,310 | C→T | 5.1% | A233A (GCG→GCA) | thiP ← | thiamine, thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine, thiamine pyrophosphate importer |
| RA | 74,211 | C→A | 7.5% | T35K (ACA→AAA) | setA → | broad specificity sugar efflux system |
| RA | 93,850 | G→T | 5.3% | V93F (GTT→TTT) | murD → | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase |
| RA | 109,449 | G→T | 5.3% | A86A (GCC→GCA) | coaE ← | dephospho‑CoA kinase |
| RA | 110,770 | C→T | 6.9% | G280G (GGC→GGT) | guaC → | GMP reductase |
| RA | 117,670 | C→T | 5.4% | P123P (CCG→CCA) | aroP ← | aromatic amino acid transporter |
| RA | 121,753 | C→T | 6.6% | Y750Y (TAC→TAT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 133,239 | G→T | 6.1% | R56S (CGT→AGT) | yacC ← | PulS_OutS family protein |
| RA | 143,179 | C→A | 7.1% | M1M (ATG→ATT) † | panD ← | aspartate 1‑decarboxylase |
| RA | 150,031 | C→A | 13.1% | S628I (AGC→ATC) | htrE ← | putative outer membrane usher protein |
| RA | 154,300 | G→T | 5.2% | L438L (CTC→CTA) | pcnB ← | poly(A) polymerase |
| RA | 207,910 | G→T | 5.7% | R582L (CGC→CTC) | ldcC → | lysine decarboxylase 2, constitutive |
| RA | 211,918 | G→A | 9.1% | E55K (GAA→AAA) | nlpE → | lipoprotein involved with copper homeostasis and adhesion |
| RA | 221,373:1 | +G | 6.1% | noncoding (1116/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,380 | T→A | 6.7% | noncoding (1123/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,390 | Δ1 bp | 6.8% | noncoding (1133/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,391 | G→A | 6.8% | noncoding (1134/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,393 | C→T | 7.2% | noncoding (1136/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,395 | G→A | 7.1% | noncoding (1138/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,397 | C→T | 7.1% | noncoding (1140/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,398 | C→T | 7.1% | noncoding (1141/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,402 | A→C | 6.4% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,407 | A→T | 7.4% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,412 | A→T | 7.7% | noncoding (1155/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,420 | A→G | 7.8% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 10.6% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 10.7% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,455 | G→A | 12.7% | noncoding (1198/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,464 | G→C | 10.2% | noncoding (1207/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,471 | C→T | 11.9% | noncoding (1214/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,476 | A→T | 13.9% | noncoding (1219/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 235,607 | G→A | 9.4% | pseudogene (15/273 nt) | yafF → | pseudogene, H repeat‑associated protein |
| RA | 249,874 | G→C | 11.9% | intergenic (+226/‑92) | yafP → / → ykfJ | putative acyl‑CoA transferase/pseudogene |
| RA | 249,908 | A→G | 11.0% | intergenic (+260/‑58) | yafP → / → ykfJ | putative acyl‑CoA transferase/pseudogene |
| RA | 259,937 | T→G | 5.3% | R8R (AGG→CGG) | ykfH ← | uncharacterized protein |
| RA | 260,899 | G→A | 5.1% | H7Y (CAC→TAC) | yafX ← | CP4‑6 prophage; uncharacterized protein |
| RA | 260,903 | C→T | 5.4% | T5T (ACG→ACA) | yafX ← | CP4‑6 prophage; uncharacterized protein |
| RA | 261,827 | C→A | 5.1% | Q146H (CAG→CAT) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
| RA | 262,193 | T→C | 7.1% | R24R (AGA→AGG) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
| RA | 262,205 | T→G | 7.8% | A20A (GCA→GCC) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
| RA | 262,209 | A→C | 6.5% | I19S (ATC→AGC) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
| RA | 262,211 | G→C | 7.5% | L18L (CTC→CTG) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
| RA | 300,827 | G→T | 5.9% | V30V (GTC→GTA) | ecpE ← | ECP production pilus chaperone |
| RA | 328,710 | G→T | 9.3% | G210V (GGA→GTA) | yahA → | c‑di‑GMP‑specific phosphodiesterase |
| RA | 354,345 | G→T | 6.6% | T19T (ACC→ACA) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| RA | 361,168 | G→T | 7.1% | V192V (GTC→GTA) | lacI ← | DNA‑binding transcriptional repressor |
| RA | 361,219 | G→T | 8.5% | V175V (GTC→GTA) | lacI ← | DNA‑binding transcriptional repressor |
| RA | 370,428 | T→C | 10.3% | intergenic (+91/‑487) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,442 | T→C | 5.3% | intergenic (+105/‑473) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,576 | Δ1 bp | 6.1% | intergenic (+239/‑339) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,577 | T→G | 6.3% | intergenic (+240/‑338) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,703 | A→G | 7.1% | intergenic (+366/‑212) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 397,578 | G→A | 6.4% | A126T (GCA→ACA) | phoA → | bacterial alkaline phosphatase |
| RA | 406,624 | Δ1 bp | 9.7% | intergenic (+116/+129) | mak → / ← araJ | manno(fructo)kinase/arabinose‑inducible putative transporter, MFS family |
| RA | 406,630 | Δ1 bp | 6.2% | intergenic (+122/+123) | mak → / ← araJ | manno(fructo)kinase/arabinose‑inducible putative transporter, MFS family |
| RA | 408,640 | G→T | 6.6% | A857E (GCA→GAA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 466,823 | C→A | 6.6% | T244T (ACC→ACA) | mdlB → | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
| RA | 474,126 | A→G | 5.5% | intergenic (‑53/+111) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 523,625 | G→T | 5.8% | pseudogene (218/708 nt) | rhsH → | pseudogene, Rhs familly protein |
| RA | 541,156 | C→A | 6.0% | G222W (GGG→TGG) | allD ← | ureidoglycolate dehydrogenase |
| RA | 574,088 | G→T | 7.6% | P88T (CCG→ACG) | borD ← | DLP12 prophage; putative lipoprotein |
| RA | 634,737 | G→A | 6.1% | E113K (GAA→AAA) | ahpC → | alkyl hydroperoxide reductase, C22 subunit |
| RA | 634,739:1 | +T | 6.5% | coding (339/564 nt) | ahpC → | alkyl hydroperoxide reductase, C22 subunit |
| RA | 634,740 | G→A | 6.2% | D114N (GAT→AAT) ‡ | ahpC → | alkyl hydroperoxide reductase, C22 subunit |
| RA | 634,742 | T→C | 6.1% | D114D (GAT→GAC) ‡ | ahpC → | alkyl hydroperoxide reductase, C22 subunit |
| RA | 634,745 | A→T | 6.3% | E115D (GAA→GAT) | ahpC → | alkyl hydroperoxide reductase, C22 subunit |
| RA | 634,746:1 | +C | 6.2% | coding (346/564 nt) | ahpC → | alkyl hydroperoxide reductase, C22 subunit |
| RA | 634,749:1 | +A | 6.2% | coding (349/564 nt) | ahpC → | alkyl hydroperoxide reductase, C22 subunit |
| RA | 644,710 | C→T | 8.3% | P106P (CCG→CCA) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 645,249 | T→C | 6.9% | N233S (AAC→AGC) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 654,946 | C→A | 5.3% | E243* (GAA→TAA) | lipA ← | lipoate synthase |
| RA | 671,701:1 | +T | 9.4% | coding (303/978 nt) | ybeQ ← | Sel1 family TPR‑like repeat protein |
| RA | 686,774 | T→C | 7.8% | K156R (AAA→AGA) | ybeX ← | putative ion transport |
| RA | 709,273 | C→A | 5.3% | T87N (ACT→AAT) | pgm → | phosphoglucomutase |
| RA | 727,171 | T→G | 5.5% | N711K (AAT→AAG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,174 | C→T | 5.4% | G712G (GGC→GGT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,207 | C→T | 5.8% | R723R (CGC→CGT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 730,138 | A→G | 8.4% | pseudogene (550/1521 nt) | rhsO → | pseudogene, Rhs family protein |
| RA | 734,251 | C→T | 7.8% | T235I (ACC→ATC) | ybfD → | H repeat‑associated putative transposase |
| RA | 752,091 | G→T | 5.4% | P243P (CCG→CCT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 763,877 | C→A | 5.1% | F148L (TTC→TTA) | mngB → | alpha‑mannosidase |
| RA | 804,118 | G→A | 5.1% | A199V (GCG→GTG) | bioA ← | 7,8‑diaminopelargonic acid synthase, PLP‑dependent |
| RA | 811,097 | G→A | 6.6% | intergenic (+94/+98) | uvrB → / ← ybhK | excinulease of nucleotide excision repair, DNA damage recognition component/putative NAD(P)‑binding transferase |
| RA | 824,963 | C→A | 8.3% | D156Y (GAC→TAC) | ybhG ← | putative membrane fusion protein (MFP) component of efflux pump, membrane anchor |
| RA | 842,411 | C→A | 8.9% | A55A (GCG→GCT) | glnP ← | glutamine transporter subunit |
| RA | 846,863 | C→T | 10.1% | T397T (ACG→ACA) | ybiP ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| RA | 948,504 | C→A | 5.8% | L169L (CTG→CTT) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 960,241 | C→A | 12.0% | Q156K (CAG→AAG) | ycaI → | ComEC family inner membrane protein |
| RA | 967,316 | C→A | 9.7% | Q37K (CAG→AAG) | ycbJ → | protein kinase‑like domain protein |
| RA | 971,447 | C→A | 7.4% | L124M (CTG→ATG) | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 977,871 | G→T | 6.4% | G457C (GGC→TGC) | ldtD → | murein L,D‑transpeptidase |
| RA | 1,004,487 | C→T | 5.3% | T396T (ACC→ACT) | rlmL → | fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
| RA | 1,011,112 | G→A | 5.9% | intergenic (+197/‑59) | pqiC → / → rmf | DUF330 family putative lipoprotein/ribosome modulation factor |
| RA | 1,012,077 | C→A | 5.0% | R560L (CGT→CTT) | ycbZ ← | putative peptidase |
| RA | 1,017,806 | G→T | 6.5% | R512S (CGC→AGC) | yccS ← | putative transporter, FUSC superfamily inner membrane protein, tandem domains |
| RA | 1,068,323 | G→A | 10.7% | A382V (GCA→GTA) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
| RA | 1,110,322 | G→A | 7.4% | R209W (CGG→TGG) | mdtG ← | putative drug efflux system protein |
| RA | 1,116,137 | G→T | 14.3% | intergenic (‑95/+20) | solA ← / ← bssS | N‑methyltryptophan oxidase, FAD‑binding/biofilm regulator |
| RA | 1,150,863 | G→T | 9.7% | W95L (TGG→TTG) | tmk → | thymidylate kinase |
| RA | 1,160,479 | C→A | 20.3% | S310* (TCG→TAG) | nagZ → | beta N‑acetyl‑glucosaminidase |
| RA | 1,171,990 | C→A | 8.1% | L370M (CTG→ATG) | lolC → | lipoprotein‑releasing system transmembrane protein |
| RA | 1,173,681 | C→A | 6.9% | I302I (ATC→ATA) | lolE → | lipoprotein‑releasing system transmembrane protein |
| RA | 1,175,865 | G→T | 10.2% | intergenic (+50/+70) | cobB → / ← ycfZ | deacetylase of acs and cheY, chemotaxis regulator/inner membrane protein |
| RA | 1,207,184 | A→G | 24.3% | C92C (TGT→TGC) | iraM ← | RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,217,742 | Δ1 bp | 10.0% | intergenic (+38/+19) | ycgH → / ← ymgD | pseudogene; putative ATP‑binding component of a transport system/uncharacterized protein |
| RA | 1,217,748 | T→C | 10.8% | intergenic (+44/+13) | ycgH → / ← ymgD | pseudogene; putative ATP‑binding component of a transport system/uncharacterized protein |
| RA | 1,229,883 | Δ1 bp | 10.8% | coding (291/1542 nt) | nhaB ← | sodium:proton antiporter |
| RA | 1,239,080 | G→T | 9.5% | G149W (GGG→TGG) | emtA → | lytic murein endotransglycosylase E |
| RA | 1,265,182 | C→T | 19.0% | G29S (GGC→AGC) | ldrB ← | toxic polypeptide, small |
| RA | 1,266,708 | C→A | 6.0% | E200* (GAG→TAG) | chaA ← | calcium/sodium:proton antiporter |
| RA | 1,282,243 | G→A | 6.1% | intergenic (+261/+279) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,421 | A→G | 10.3% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,430 | C→T | 10.4% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,439 | A→G | 16.1% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,495 | T→G | 5.1% | intergenic (+513/+27) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,497 | A→G | 7.1% | intergenic (+515/+25) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,299,223 | C→T | 5.9% | G71G (GGC→GGT) | oppD → | oligopeptide transporter subunit |
| RA | 1,344,871 | C→A | 5.3% | L142L (CTG→CTT) | fabI ← | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent |
| RA | 1,345,451 | G→T | 7.5% | intergenic (‑155/+213) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| RA | 1,384,179 | G→A | 6.8% | A226V (GCG→GTG) | mpaA ← | murein peptide amidase A |
| RA | 1,408,669 | C→T | 7.1% | A128T (GCT→ACT) | recT ← | Rac prophage; recombination and repair protein |
| RA | 1,422,040 | A→G | 8.2% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 8.9% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,150 | C→T | 6.6% | pseudogene (834/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,252 | A→G | 5.3% | pseudogene (732/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,627 | A→G | 6.6% | pseudogene (357/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,798 | A→G | 6.8% | pseudogene (186/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,442,402 | G→T | 6.8% | V209V (GTG→GTT) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,460,650 | C→T | 7.8% | pseudogene (1002/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,819 | G→A | 5.7% | pseudogene (1171/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,488,240 | C→T | 8.3% | A505V (GCG→GTG) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,505,616 | G→T | 7.6% | E453* (GAA→TAA) | ydcR → | putative DNA‑binding transcriptional regulator/putative amino transferase |
| RA | 1,508,281 | C→A | 5.7% | S65* (TCG→TAG) | ydcU → | putative spermidine/putrescine transporter subunit |
| RA | 1,508,958 | C→A | 5.4% | L291M (CTG→ATG) | ydcU → | putative spermidine/putrescine transporter subunit |
| RA | 1,535,331 | C→T | 13.4% | W506* (TGG→TAG) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,535,660 | C→A | 12.0% | W396C (TGG→TGT) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,536,926 | C→T | 12.1% | intergenic (‑79/+3) | narZ ← / ← narU | nitrate reductase 2 (NRZ), alpha subunit/nitrate/nitrite transporter |
| RA | 1,593,906 | G→T | 7.4% | P187P (CCC→CCA) | lsrK ← | autoinducer‑2 (AI‑2) kinase |
| RA | 1,608,313 | C→A | 7.6% | A216A (GCG→GCT) | sad ← | succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| RA | 1,609,888 | G→T | 8.7% | E276D (GAG→GAT) | yneJ → | putative DNA‑binding transcriptional regulator |
| RA | 1,624,979 | C→T | 8.4% | Q64Q (CAG→CAA) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,666,923 | A→G | 8.1% | Q236R (CAA→CGA) | ydgD → | putative peptidase |
| RA | 1,680,042 | C→T | 5.3% | L268L (CTG→CTA) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,680,118 | G→A | 7.4% | A243V (GCG→GTG) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,698,243 | T→A | 6.4% | D108V (GAT→GTT) | ydgJ ← | putative oxidoreductase |
| RA | 1,702,919 | C→G | 5.5% | Q582E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,702,966 | T→A | 10.0% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,707,517 | C→A | 7.1% | F164L (TTC→TTA) | dtpA → | dipeptide and tripeptide permease A |
| RA | 1,711,270 | C→T | 6.4% | A70A (GCG→GCA) | tyrS ← | tyrosyl‑tRNA synthetase |
| RA | 1,713,443 | G→T | 7.3% | A139A (GCC→GCA) | anmK ← | anhydro‑N‑acetylmuramic acid kinase |
| RA | 1,737,458 | C→A | 8.2% | S14S (TCG→TCT) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,740,742 | T→G | 8.4% | noncoding (51/77 nt) | valV → | tRNA‑Val |
| RA | 1,755,705 | T→C | 5.9% | Q115R (CAG→CGG) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,802,457 | G→A | 5.8% | Q135Q (CAG→CAA) | yniA → | fructosamine kinase family protein |
| RA | 1,828,017 | C→A | 7.1% | A120A (GCC→GCA) | ydjX → | TVP38/TMEM64 family inner membrane protein |
| RA | 1,834,750 | G→A | 5.4% | A343T (GCT→ACT) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,868,362 | G→T | 10.4% | S26S (TCC→TCA) | yoaI ← | uncharacterized protein |
| RA | 1,889,829 | G→A | 5.9% | S256S (TCG→TCA) | pabB → | aminodeoxychorismate synthase, subunit I |
| RA | 1,894,931 | C→A | 5.7% | M304I (ATG→ATT) | yoaE ← | putative membrane protein/conserved protein |
| RA | 1,912,336 | C→T | 8.5% | Y190Y (TAC→TAT) | yebT → | MCE domain protein |
| RA | 1,915,438 | C→A | 12.9% | P320H (CCC→CAC) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| RA | 1,922,551 | G→T | 7.8% | D182E (GAC→GAA) | ptrB ← | protease II |
| RA | 1,923,915 | G→T | 6.8% | S17Y (TCT→TAT) | yebE ← | DUF533 family inner membrane protein |
| RA | 1,928,323 | G→T | 5.6% | P180Q (CCG→CAG) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,930,951 | A→G | 13.7% | S15G (AGC→GGC) | yebK → | putative DNA‑binding transcriptional regulator |
| RA | 1,953,362 | C→A | 5.5% | V54V (GTG→GTT) | cutC ← | copper homeostasis protein |
| RA | 1,988,343 | C→A | 7.9% | K166N (AAG→AAT) | uvrY ← | response regulator in two‑component regulatory system with BarA |
| RA | 1,991,903 | C→A | 7.1% | G20W (GGG→TGG) | yecS ← | ABC family putative inner membrane permease |
| RA | 1,997,988 | C→T | 5.1% | S212S (AGC→AGT) | fliD → | flagellar filament capping protein |
| RA | 2,056,824 | G→A | 10.0% | intergenic (‑20/+45) | ldtA ← / ← cobT | L,D‑transpeptidase linking Lpp to murein/nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,059,656 | T→C | 11.3% | intergenic (‑21/+130) | yeeH ← / ← insH1 | pseudogene/IS5 transposase and trans‑activator |
| RA | 2,082,293 | C→A | 5.5% | R106L (CGC→CTC) | yeeZ ← | putative epimerase |
| RA | 2,144,397 | C→A | 6.4% | G24C (GGT→TGT) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,151,727 | C→A | 6.7% | P995Q (CCG→CAG) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,176,392 | C→T | 7.5% | G247S (GGT→AGT) | yegX ← | putative family 25 glycosyl hydrolase |
| RA | 2,201,626 | G→T | 5.8% | G61* (GGA→TGA) | yehP → | VMA domain putative YehL ATPase stimulator |
| RA | 2,207,163 | G→T | 7.0% | R321R (CGG→AGG) | yehU ← | inner membrane putative sensory kinase in two‑component system with YehT |
| RA | 2,209,069 | G→A | 5.4% | G242D (GGC→GAC) | mlrA → | transcriptional activator of csgD and csgBA |
| RA | 2,219,202 | C→A | 7.9% | intergenic (‑92/‑78) | yohC ← / → yohD | Yip1 family inner membrane protein/DedA family inner membrane protein |
| RA | 2,238,440 | G→T | 6.5% | S603R (AGC→AGA) | cirA ← | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter |
| RA | 2,244,733 | G→T | 7.4% | G139C (GGT→TGT) | nfo → | endonuclease IV with intrinsic 3'‑5' exonuclease activity |
| RA | 2,298,467 | T→C | 6.5% | intergenic (+595/+120) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,298,492 | A→G | 8.6% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,312,614 | C→A | 9.1% | D248Y (GAT→TAT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,362,168 | G→A | 5.5% | L217L (CTG→CTA) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,383,997 | G→T | 5.5% | L330M (CTG→ATG) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,442,618 | G→A | 5.4% | L178L (CTG→CTA) | smrB → | putative DNA endonuclease |
| RA | 2,443,767 | G→A | 6.2% | S101S (AGC→AGT) | yfcP ← | putative fimbrial‑like adhesin protein |
| RA | 2,447,704 | C→A | 6.8% | pseudogene (777/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| RA | 2,452,455 | G→A | 7.7% | P62S (CCG→TCG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,458,408 | C→A | 7.2% | G27W (GGG→TGG) | mlaA ← | ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| RA | 2,469,757 | C→T | 6.2% | intergenic (+47/‑32) | ypdJ → / → torI | exisonase remnant/response regulator inhibitor for tor operon |
| RA | 2,519,176 | C→A | 5.1% | R231R (CGA→AGA) | yfeN → | putative outer membrane protein |
| RA | 2,522,619 | G→T | 6.0% | A306D (GCC→GAC) | ligA ← | DNA ligase, NAD(+)‑dependent |
| RA | 2,567,493 | C→A | 7.0% | D58Y (GAT→TAT) | eutT ← | cobalamin adenosyltransferase involved in ethanolamine utilization |
| RA | 2,570,400 | A→G | 6.3% | V446A (GTT→GCT) | maeB ← | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| RA | 2,574,466 | G→T | 5.1% | R491L (CGA→CTA) | tktB → | transketolase 2, thiamine triphosphate‑binding |
| RA | 2,575,692 | A→G | 5.6% | L149L (TTG→CTG) | ypfG ← | DUF1176 family protein |
| RA | 2,597,458 | G→T | 5.9% | V85L (GTG→TTG) | hyfC → | hydrogenase 4, membrane subunit |
| RA | 2,602,399 | C→A | 14.0% | P185H (CCT→CAT) | hyfG → | hydrogenase 4, subunit |
| RA | 2,608,165 | C→A | 5.1% | intergenic (+24/+14) | focB → / ← yfgO | putative formate transporter/putative UPF0118 family inner membrane permease |
| RA | 2,631,105 | C→A | 5.3% | D303Y (GAC→TAC) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,647,794 | G→A | 6.1% | P167S (CCG→TCG) | sseB ← | rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| RA | 2,698,804 | A→C | 7.2% | R560R (CGT→CGG) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,729,190 | C→A | 8.7% | G61C (GGT→TGT) | rluD ← | 23S rRNA pseudouridine(1911,1915,1917) synthase |
| RA | 2,763,992 | A→C | 9.2% | G63G (GGA→GGC) | ypjK → | CP4‑57 prophage; putative inner membrane protein |
| RA | 2,771,592 | T→A | 8.1% | L1498F (TTA→TTT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,771,620 | C→G | 9.5% | G1489A (GGT→GCT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,791,802 | G→T | 6.5% | A18D (GCT→GAT) | stpA ← | DNA binding protein, nucleoid‑associated |
| RA | 2,811,350 | A→C | 8.7% | intergenic (‑131/+68) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,405 | A→G | 5.4% | intergenic (‑186/+13) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,408 | T→A | 6.3% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,765 | C→A | 6.8% | intergenic (‑132/+67) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,771 | G→A | 5.7% | intergenic (‑138/+61) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,833,521 | C→A | 5.7% | T213T (ACC→ACA) | ascF → | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component |
| RA | 2,840,917 | G→T | 9.3% | P562T (CCG→ACG) | hycC ← | hydrogenase 3, membrane subunit |
| RA | 2,887,290 | C→A | 6.4% | R5S (CGT→AGT) | ygcO → | putative 4Fe‑4S cluster‑containing protein |
| RA | 2,898,511 | C→A | 5.9% | V89V (GTG→GTT) | queE ← | 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 2,900,421 | C→A | 14.3% | D294Y (GAC→TAC) | eno ← | enolase |
| RA | 2,903,090 | G→T | 12.6% | intergenic (‑65/+163) | pyrG ← / ← mazG | CTP synthetase/nucleoside triphosphate pyrophosphohydrolase |
| RA | 2,933,546 | G→T | 7.9% | R353S (CGC→AGC) | rlmM ← | 23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 2,959,130 | C→A | 23.1% | P89P (CCG→CCT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,979,475 | C→A | 5.0% | T90T (ACC→ACA) | yqeG → | putative transporter |
| RA | 3,030,463 | C→A | 8.3% | G335* (GGA→TGA) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,046,396 | G→T | 6.5% | A161D (GCT→GAT) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,053,249 | C→A | 5.3% | F46L (TTC→TTA) | argP → | transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,064,718 | T→G | 9.8% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,072,719 | C→T | 12.1% | intergenic (‑30/+284) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,073,770 | C→A | 9.0% | V409F (GTT→TTT) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,076,165 | G→T | 6.7% | intergenic (+135/+71) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era/agmatinase |
| RA | 3,086,485 | G→T | 6.2% | E64* (GAA→TAA) | yqgE → | uncharacterized protein |
| RA | 3,127,539 | C→T | 11.8% | S17L (TCA→TTA) | yghT → | putative ATP‑binding protein |
| RA | 3,138,358 | C→T | 6.9% | V48I (GTA→ATA) | hybA ← | hydrogenase 2 4Fe‑4S ferredoxin‑type component |
| RA | 3,162,604 | G→T | 5.7% | intergenic (‑14/+39) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,183,528 | G→T | 10.2% | E97* (GAA→TAA) | yqiH → | putative periplasmic pilin chaperone |
| RA | 3,184,639 | C→A | 5.0% | L217I (CTT→ATT) | yqiI → | fimbrial protein |
| RA | 3,216,303 | C→A | 9.5% | V104V (GTC→GTA) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
| RA | 3,223,587 | C→A | 7.1% | D447E (GAC→GAA) | ygjK → | alpha‑glucosidase |
| RA | 3,238,257 | C→A | 8.6% | intergenic (‑157/‑206) | uxaC ← / → exuT | uronate isomerase/hexuronate transporter |
| RA | 3,259,592 | G→T | 19.7% | S278* (TCG→TAG) | tdcA ← | tdc operon transcriptional activator |
| RA | 3,308,212 | C→A | 5.1% | E388* (GAA→TAA) | infB ← | translation initiation factor IF‑2 |
| RA | 3,337,273 | C→A | 8.6% | P179T (CCG→ACG) | lptA → | periplasmic LPS‑binding protein |
| RA | 3,340,106 | G→A | 6.3% | R57Q (CGG→CAG) | ptsN → | sugar‑specific enzyme IIA component of PTS |
| RA | 3,349,655 | G→A | 5.4% | A524A (GCG→GCA) | gltB → | glutamate synthase, large subunit |
| RA | 3,351,193 | C→A | 8.6% | S1037* (TCG→TAG) | gltB → | glutamate synthase, large subunit |
| RA | 3,352,440 | T→C | 6.4% | F1453L (TTC→CTC) | gltB → | glutamate synthase, large subunit |
| RA | 3,378,464 | C→A | 11.1% | P135T (CCT→ACT) | argR → | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
| RA | 3,411,742 | T→G | 16.7% | intergenic (+246/‑7) | acrF → / → yhdV | multidrug efflux system protein/putative outer membrane protein |
| RA | 3,416,708 | G→A | 9.2% | intergenic (+155/+74) | yhdZ → / ← rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| RA | 3,416,715 | T→C | 8.4% | intergenic (+162/+67) | yhdZ → / ← rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| RA | 3,505,968 | A→C | 7.1% | intergenic (‑265/+25) | yhfZ ← / ← trpS | putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
| RA | 3,512,041:1 | +G | 5.8% | coding (383/522 nt) | aroK ← | shikimate kinase I |
| RA | 3,512,041:2 | +T | 5.8% | coding (383/522 nt) | aroK ← | shikimate kinase I |
| RA | 3,521,752 | G→T | 5.8% | G642V (GGC→GTC) | yrfF → | inner membrane protein |
| RA | 3,551,421 | C→A | 10.9% | L6L (CTG→CTT) | rtcB ← | RNA‑splicing ligase |
| RA | 3,553,124 | C→T | 7.9% | Q500* (CAG→TAG) | rtcR → | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| RA | 3,568,450 | C→A | 5.3% | A7E (GCA→GAA) | yhgN → | UPF0056 family inner membrane protein |
| RA | 3,581,404 | G→T | 7.4% | L24M (CTG→ATG) | ugpQ ← | glycerophosphodiester phosphodiesterase, cytosolic |
| RA | 3,601,093 | G→A | 5.7% | G428D (GGT→GAT) | zntA → | zinc, cobalt and lead efflux system |
| RA | 3,605,087 | C→A | 6.8% | E3* (GAA→TAA) | yhhS ← | putative arabinose efflux transporter |
| RA | 3,606,516 | C→A | 8.8% | P63Q (CCG→CAG) | acpT → | 4'‑phosphopantetheinyl transferase |
| RA | 3,609,197 | G→T | 6.7% | M199I (ATG→ATT) | nikB → | nickel transporter subunit |
| RA | 3,660,722 | A→G | 9.1% | H73H (CAT→CAC) | gadA ← | glutamate decarboxylase A, PLP‑dependent |
| RA | 3,660,728 | G→A | 9.0% | N71N (AAC→AAT) | gadA ← | glutamate decarboxylase A, PLP‑dependent |
| RA | 3,662,961 | C→A | 6.8% | Q4K (CAG→AAG) | treF → | cytoplasmic trehalase |
| RA | 3,707,729 | G→T | 5.9% | Q676K (CAG→AAG) | bisC ← | biotin sulfoxide reductase |
| RA | 3,719,163 | G→T | 6.1% | intergenic (‑91/‑84) | ysaB ← / → wecH | uncharacterized protein/O‑acetyltransferase for enterobacterial common antigen (ECA) |
| RA | 3,720,359 | C→A | 6.1% | V121V (GTG→GTT) | yiaA ← | YiaAB family inner membrane protein, tandem domains |
| RA | 3,725,795 | G→T | 7.4% | E79* (GAA→TAA) | xylG → | fused D‑xylose transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 3,728,102 | G→A | 6.1% | V341V (GTG→GTA) | xylH → | D‑xylose ABC transporter permease subunit |
| RA | 3,758,716 | A→G | 6.4% | R1058R (AGA→AGG) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,807,911 | G→A | 5.6% | A20T (GCG→ACG) | slmA → | nucleoid occlusion factor, anti‑FtsZ division inhibitor |
| RA | 3,849,637 | C→A | 8.5% | D11Y (GAT→TAT) | yidH ← | DUF202 family inner membrane protein |
| RA | 3,850,601 | G→A | 7.9% | D388D (GAC→GAT) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,883,873 | T→C | 12.5% | V93A (GTT→GCT) | tnaB → | tryptophan transporter of low affinity |
| RA | 3,883,876 | C→T | 7.0% | A94V (GCC→GTC) | tnaB → | tryptophan transporter of low affinity |
| RA | 3,889,822 | G→T | 7.1% | P50T (CCG→ACG) | purP ← | adenine permease, high affinity; adenine:H+ symporter |
| RA | 3,897,978 | G→T | 7.8% | P327Q (CCG→CAG) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 3,898,025 | C→T | 5.8% | P311P (CCG→CCA) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 3,922,048 | C→A | 5.9% | E306* (GAA→TAA) | viaA ← | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| RA | 3,955,206 | G→T | 6.0% | L390L (CTG→CTT) | rep → | DNA helicase and single‑stranded DNA‑dependent ATPase |
| RA | 3,973,769 | C→A | 5.3% | L152M (CTG→ATG) | wecG → | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase |
| RA | 3,988,611 | G→T | 7.8% | V164F (GTC→TTC) | dapF → | diaminopimelate epimerase |
| RA | 3,993,739 | C→A | 6.7% | T226T (ACG→ACT) | yigE ← | DUF2233 family protein |
| RA | 4,008,923 | G→T | 10.4% | Q203K (CAG→AAG) | ysgA ← | putative carboxymethylenebutenolidase |
| RA | 4,049,086 | C→A | 5.7% | R205L (CGC→CTC) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,106,240 | T→C | 5.8% | E304G (GAA→GGA) | glpK ← | glycerol kinase |
| RA | 4,113,302 | G→A | 5.9% | intergenic (‑35/+57) | ftsN ← / ← cytR | essential cell division protein/Anti‑activator for CytR‑CRP nucleoside utilization regulon |
| RA | 4,167,536 | G→T | 6.4% | W84L (TGG→TTG) | secE → | preprotein translocase membrane subunit |
| RA | 4,173,745 | G→A | 11.9% | G858D (GGT→GAT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,178,208 | C→T | 17.2% | S977S (TCC→TCT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,209 | C→A | 24.7% | R978S (CGT→AGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,500 | C→T | 6.7% | R1075C (CGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,870 | T→A | 7.3% | V1198E (GTG→GAG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,207,571 | G→T | 8.2% | G179C (GGT→TGT) | aceA → | isocitrate lyase |
| RA | 4,218,686 | G→T | 5.3% | G343V (GGC→GTC) | yjbB → | putative Na+/Pi‑cotransporter |
| RA | 4,270,774 | G→A | 9.5% | L289L (CTG→CTA) | yjcE → | putative cation/proton antiporter |
| RA | 4,298,328 | A→G | 5.6% | L320P (CTT→CCT) | alsC ← | D‑allose transporter subunit |
| RA | 4,299,213 | T→C | 11.1% | K25R (AAA→AGA) | alsC ← | D‑allose transporter subunit |
| RA | 4,301,540 | C→A | 14.0% | G107V (GGC→GTC) | alsB ← | D‑allose transporter subunit |
| RA | 4,349,803 | C→T | 6.7% | V16I (GTT→ATT) | cadB ← | putative lysine/cadaverine transporter |
| RA | 4,382,813 | C→A | 6.9% | E358* (GAA→TAA) | queG ← | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis |
| RA | 4,397,211 | G→A | 5.9% | G247G (GGG→GGA) | rnr → | exoribonuclease R, RNase R |
| RA | 4,399,784 | C→A | 10.6% | T231T (ACC→ACA) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,424,794 | G→T | 7.5% | P530Q (CCG→CAG) | cpdB ← | 2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| RA | 4,434,531 | G→A | 5.3% | P201P (CCG→CCA) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,443,766 | G→T | 16.3% | G123W (GGG→TGG) | yjfF → | inner membrane putative ABC superfamily sugar transporter permease |
| RA | 4,450,603 | C→A | 6.6% | W625C (TGG→TGT) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,451,946 | T→C | 6.0% | I178V (ATC→GTC) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,455,789 | G→T | 7.4% | T70N (ACC→AAC) | treB ← | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component |
| RA | 4,457,232 | A→G | 6.1% | intergenic (‑169/‑16) | treR ← / → mgtL | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor/regulatory leader peptide for mgtA |
| RA | 4,498,906 | T→C | 6.7% | pseudogene (81/785 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,498,909 | G→T | 6.9% | pseudogene (84/785 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,498,981 | G→A | 5.2% | pseudogene (156/785 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,499,835 | A→G | 5.1% | pseudogene (215/330 nt) | yjhV → | pseudogene, KpLE2 phage‑like element |
| RA | 4,501,356 | G→T | 5.1% | P292P (CCC→CCA) | fecD ← | iron‑dicitrate transporter subunit |
| RA | 4,508,444 | C→A | 5.5% | P34H (CCT→CAT) | insA → | IS1 repressor TnpA |
| RA | 4,508,733 | A→C | 5.1% | pseudogene (196/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,740 | G→A | 5.3% | pseudogene (203/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,897 | T→A | 6.9% | pseudogene (360/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,900 | C→T | 5.2% | pseudogene (363/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,604,320 | T→C | 9.9% | intergenic (+243/+177) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,605,001 | G→A | 6.1% | G120G (GGC→GGT) | yjjW ← | putative pyruvate formate lyase activating enzyme |
| RA | 4,605,715 | C→A | 6.5% | G390C (GGC→TGC) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
| RA | 4,620,909 | C→A | 6.6% | A120A (GCC→GCA) | slt → | lytic murein transglycosylase, soluble |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 73 (1.070) | 47 (0.690) | 28/250 | NT | 39.2% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 370378 = | NA (NA) | 15 (0.230) | 4/234 | NT | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | CP009273 | 372785 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 1203246 = | 32 (0.470) | 33 (0.550) | 19/218 | NT | 48.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 41 (0.690) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 32 (0.470) | 25 (0.420) | 13/218 | NT | 42.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 41 (0.690) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||