mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 96,942 | C→A | 6.2% | A271E (GCG→GAG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 122,409 | C→A | 5.0% | S76S (TCC→TCA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 139,146 | T→A | 5.4% | I4I (ATA→ATT) | can ← | carbonic anhydrase |
| RA | 177,530 | A→G | 5.3% | S54G (AGC→GGC) | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 187,576 | G→T | 5.3% | C78F (TGC→TTC) | tsf → | translation elongation factor EF‑Ts |
| RA | 201,304 | Δ1 bp | 5.1% | coding (325/597 nt) | rnhB → | ribonuclease HII, degrades RNA of DNA‑RNA hybrids |
| RA | 231,443 | Δ1 bp | 5.7% | coding (141/723 nt) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 231,448 | G→C | 5.7% | G49A (GGC→GCC) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 231,452:1 | +C | 5.7% | coding (150/723 nt) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 280,948 | T→A | 5.5% | intergenic (+69/‑158) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 306,722 | C→G | 9.1% | S109T (AGC→ACC) | ecpR ← | putative transcriptional regulator for the ecp operon |
| RA | 306,727 | G→A | 10.1% | Y107Y (TAC→TAT) ‡ | ecpR ← | putative transcriptional regulator for the ecp operon |
| RA | 306,728 | T→C | 9.8% | Y107C (TAC→TGC) ‡ | ecpR ← | putative transcriptional regulator for the ecp operon |
| RA | 306,733 | C→G | 10.4% | W105C (TGG→TGC) | ecpR ← | putative transcriptional regulator for the ecp operon |
| RA | 326,128 | T→A | 7.9% | W319R (TGG→AGG) | betT → | choline transporter of high affinity |
| RA | 345,945 | G→T | 5.6% | E75* (GAA→TAA) | prpC → | 2‑methylcitrate synthase |
| RA | 403,927 | T→C | 7.2% | intergenic (+10/‑138) | yaiE → / → ykiA | UPF0345 family protein/pseudogene |
| RA | 403,932 | C→G | 7.5% | intergenic (+15/‑133) | yaiE → / → ykiA | UPF0345 family protein/pseudogene |
| RA | 403,935 | G→C | 7.1% | intergenic (+18/‑130) | yaiE → / → ykiA | UPF0345 family protein/pseudogene |
| RA | 403,938 | C→G | 6.8% | intergenic (+21/‑127) | yaiE → / → ykiA | UPF0345 family protein/pseudogene |
| RA | 403,943 | G→A | 7.0% | intergenic (+26/‑122) | yaiE → / → ykiA | UPF0345 family protein/pseudogene |
| RA | 472,986 | T→A | 5.7% | E363V (GAA→GTA) | ylaB ← | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 500,356 | T→A | 6.0% | intergenic (‑204/‑14) | fsr ← / → ushA | putative fosmidomycin efflux system protein/bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | 553,967 | C→A | 5.9% | I100I (ATC→ATA) | sfmA → | FimA homolog |
| RA | 553,971 | G→T | 5.3% | D102Y (GAT→TAT) | sfmA → | FimA homolog |
| RA | 553,974 | A→C | 5.1% | N103H (AAT→CAT) | sfmA → | FimA homolog |
| RA | 565,191 | C→T | 6.2% | Y278Y (TAC→TAT) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,504 | G→A | 7.5% | E383K (GAG→AAG) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,506 | G→T | 7.4% | E383D (GAG→GAT) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,507 | C→T | 7.5% | L384F (CTT→TTT) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,512 | G→T | 7.7% | Q385H (CAG→CAT) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,513 | A→C | 7.3% | M386L (ATG→CTG) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,518 | A→G | 7.2% | K387K (AAA→AAG) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,519 | A→C | 7.2% | I388L (ATT→CTT) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 565,521 | T→C | 7.3% | I388I (ATT→ATC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 576,289 | A→T | 6.6% | intergenic (‑388/‑1) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 638,816 | C→T | 5.3% | intergenic (+34/+197) | ybdR → / ← rnk | putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase |
| RA | 722,501 | C→A | 6.4% | intergenic (‑9/+14) | kdpB ← / ← kdpA | potassium translocating ATPase, subunit B/potassium translocating ATPase, subunit A |
| RA | 775,359 | C→A | 5.2% | S102R (AGC→AGA) | ybgF → | periplasmic TolA‑binding protein |
| RA | 783,082 | T→G | 5.1% | intergenic (‑31/+171) | gpmA ← / ← galM | phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase |
| RA | 783,086 | A→T | 5.1% | intergenic (‑35/+167) | gpmA ← / ← galM | phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase |
| RA | 1,009,472 | C→A | 5.9% | P253Q (CCG→CAG) | pqiB → | paraquat‑inducible, SoxRS‑regulated MCE domain protein |
| RA | 1,039,910 | C→A | 5.8% | E75* (GAG→TAG) | etp ← | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P |
| RA | 1,064,646 | A→G | 5.7% | L217S (TTA→TCA) | rutG ← | pyrimidine permease |
| RA | 1,093,402 | A→T | 5.3% | K21* (AAA→TAA) | ghrA → | glyoxylate/hydroxypyruvate reductase A |
| RA | 1,141,592 | C→T | 5.6% | E154K (GAA→AAA) | yceF ← | Maf‑like protein |
| RA | 1,163,298 | G→A | 6.1% | G82S (GGC→AGC) | ycfJ → | uncharacterized protein |
| RA | 1,174,982 | T→A | 5.5% | intergenic (+22/‑105) | nagK → / → cobB | N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator |
| RA | 1,182,271 | G→T | 5.1% | E324D (GAG→GAT) | pepT → | peptidase T |
| RA | 1,191,676 | C→T | 5.3% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,688 | C→T | 5.3% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,701 | T→C | 5.2% | L375L (TTA→CTA) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,703 | A→G | 5.2% | L375L (TTA→TTG) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,209,681 | Δ1 bp | 6.5% | intergenic (‑166/+39) | bluR ← / ← bluF | repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,209,689 | A→C | 6.5% | intergenic (‑174/+31) | bluR ← / ← bluF | repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,209,690 | C→A | 6.4% | intergenic (‑175/+30) | bluR ← / ← bluF | repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,209,691 | T→G | 6.4% | intergenic (‑176/+29) | bluR ← / ← bluF | repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,209,692 | G→T | 6.5% | intergenic (‑177/+28) | bluR ← / ← bluF | repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,209,699:1 | +C | 6.8% | intergenic (‑184/+21) | bluR ← / ← bluF | repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,210,201 | A→G | 7.8% | L244S (TTA→TCA) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,210,205 | G→A | 8.0% | L243L (CTA→TTA) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,210,207 | T→A | 8.1% | N242I (AAT→ATT) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,210,213 | G→T | 9.1% | S240* (TCA→TAA) ‡ | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,210,214 | A→C | 8.1% | S240A (TCA→GCA) ‡ | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,210,220 | T→A | 5.6% | M238L (ATG→TTG) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,210,222 | T→C | 5.5% | K237R (AAA→AGA) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
| RA | 1,311,105 | C→T | 5.1% | S125S (TCG→TCA) | trpA ← | tryptophan synthase, alpha subunit |
| RA | 1,406,365 | G→A | 5.3% | A376A (GCC→GCT) | intR ← | Rac prophage; integrase |
| RA | 1,496,647 | Δ1 bp | 5.3% | intergenic (+235/‑67) | tehB → / → ydcL | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein/lipoprotein |
| RA | 1,528,878 | C→A | 5.4% | R200S (CGC→AGC) | nhoA → | N‑hydroxyarylamine O‑acetyltransferase |
| RA | 1,576,972 | G→A | 6.0% | intergenic (‑191/+211) | ydeN ← / ← ydeO | putative Ser‑type periplasmic non‑aryl sulfatase/UV‑inducible global regulator, EvgA‑, GadE‑dependent |
| RA | 1,576,974 | T→A | 6.2% | intergenic (‑193/+209) | ydeN ← / ← ydeO | putative Ser‑type periplasmic non‑aryl sulfatase/UV‑inducible global regulator, EvgA‑, GadE‑dependent |
| RA | 1,576,976 | T→A | 6.4% | intergenic (‑195/+207) | ydeN ← / ← ydeO | putative Ser‑type periplasmic non‑aryl sulfatase/UV‑inducible global regulator, EvgA‑, GadE‑dependent |
| RA | 1,576,978 | T→C | 6.5% | intergenic (‑197/+205) | ydeN ← / ← ydeO | putative Ser‑type periplasmic non‑aryl sulfatase/UV‑inducible global regulator, EvgA‑, GadE‑dependent |
| RA | 1,602,964 | C→T | 5.2% | D106N (GAT→AAT) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,623,971 | C→A | 5.8% | A400A (GCG→GCT) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,642,600 | Δ1 bp | 6.2% | intergenic (+2/‑165) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,642,605 | C→T | 6.1% | intergenic (+7/‑160) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,642,606 | A→G | 6.1% | intergenic (+8/‑159) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,642,610:1 | +T | 5.9% | intergenic (+12/‑155) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,665,315 | C→T | 6.3% | intergenic (+106/‑318) | ynfM → / → asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein |
| RA | 1,740,808 | A→T | 6.2% | noncoding (36/77 nt) | valW → | tRNA‑Val |
| RA | 1,767,267 | G→A | 6.7% | G167S (GGC→AGC) | ydiN → | MFS transporter superfamily protein |
| RA | 1,786,220 | C→A | 6.2% | D20Y (GAC→TAC) | ydiV ← | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase |
| RA | 1,810,840 | G→T | 5.1% | Q185K (CAA→AAA) | chbG ← | chito‑oligosaccharide deacetylase |
| RA | 1,835,627 | G→A | 5.5% | P12S (CCG→TCG) | ynjF ← | inner membrane protein, phosphatidylglycerophosphate synthase homolog |
| RA | 1,867,717 | T→A | 5.7% | L474I (TTA→ATA) | yeaJ → | putative diguanylate cyclase |
| RA | 1,945,035 | A→T | 5.2% | intergenic (‑256/‑54) | aspS ← / → yecD | aspartyl‑tRNA synthetase/isochorismatase family protein |
| RA | 2,005,634 | T→A | 7.4% | pseudogene (199/312 nt) | yedN ← | pseudogene, IpaH/YopM family |
| RA | 2,005,639 | A→T | 7.0% | pseudogene (194/312 nt) | yedN ← | pseudogene, IpaH/YopM family |
| RA | 2,005,640 | A→T | 7.0% | pseudogene (193/312 nt) | yedN ← | pseudogene, IpaH/YopM family |
| RA | 2,005,645 | T→A | 7.1% | pseudogene (188/312 nt) | yedN ← | pseudogene, IpaH/YopM family |
| RA | 2,074,305 | C→T | 5.9% | E147K (GAA→AAA) | sbmC ← | DNA gyrase inhibitor |
| RA | 2,093,015 | G→C | 5.8% | A27G (GCA→GGA) ‡ | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,093,016 | C→G | 5.7% | A27P (GCA→CCA) ‡ | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,093,022 | C→A | 5.6% | V25F (GTT→TTT) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,093,023 | C→A | 5.6% | E24D (GAG→GAT) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,093,030 | T→G | 6.4% | N22T (AAT→ACT) ‡ | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,093,031 | T→G | 6.4% | N22H (AAT→CAT) ‡ | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,093,037 | C→G | 5.3% | A20P (GCA→CCA) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,093,038 | G→C | 5.4% | I19M (ATC→ATG) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,208,350 | G→A | 6.1% | A2A (GCG→GCA) | mlrA → | transcriptional activator of csgD and csgBA |
| RA | 2,257,665 | G→T | 6.1% | L108F (TTG→TTT) | setB → | lactose/glucose efflux system |
| RA | 2,272,901 | A→G | 5.7% | A113A (GCT→GCC) | bcr ← | bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,272,904 | C→T | 5.7% | A112A (GCG→GCA) | bcr ← | bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,272,907 | A→G | 5.7% | A111A (GCT→GCC) | bcr ← | bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,279,618 | A→T | 8.1% | intergenic (+3/‑72) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,279,621 | T→A | 8.3% | intergenic (+6/‑69) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,279,624 | A→T | 8.3% | intergenic (+9/‑66) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,318,125 | A→T | 5.7% | K180* (AAA→TAA) | atoA → | acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
| RA | 2,323,770 | G→A | 5.2% | pseudogene (4112/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| RA | 2,360,442 | G→A | 7.3% | E346K (GAA→AAA) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,360,454 | G→A | 6.8% | E350K (GAA→AAA) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,543,933 | C→G | 6.3% | intergenic (‑29/+67) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,543,935 | A→T | 6.2% | intergenic (‑31/+65) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,543,937 | C→G | 6.3% | intergenic (‑33/+63) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,580,312 | C→G | 5.1% | A408G (GCG→GGG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP (NarL) |
| RA | 2,649,331 | A→G | 5.2% | R129R (CGT→CGC) | pepB ← | aminopeptidase B |
| RA | 2,685,645 | G→C | 5.6% | H1086Q (CAC→CAG) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,685,651 | A→G | 5.4% | D1084D (GAT→GAC) ‡ | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,685,652 | T→A | 5.4% | D1084V (GAT→GTT) ‡ | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,685,653 | C→T | 5.4% | D1084N (GAT→AAT) ‡ | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,685,659 | G→C | 5.7% | L1082V (CTG→GTG) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,926,687 | T→A | 8.1% | N121Y (AAT→TAT) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 3,044,065 | A→G | 8.2% | intergenic (‑39/+409) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,044,072 | A→T | 8.9% | intergenic (‑46/+402) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,044,074 | T→A | 9.0% | intergenic (‑48/+400) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,044,076 | A→T | 9.1% | intergenic (‑50/+398) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,044,083 | C→T | 9.4% | intergenic (‑57/+391) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,087,021 | G→T | 8.6% | D55Y (GAC→TAC) | yqgF → | putative Holliday junction resolvase |
| RA | 3,117,969 | C→T | 6.2% | E284K (GAA→AAA) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,173,086 | G→A | 6.0% | intergenic (+131/‑17) | tolC → / → ygiB | transport channel/DUF1190 family protein |
| RA | 3,249,540 | C→T | 6.0% | T157T (ACG→ACA) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,300,684 | T→C | 5.1% | E179G (GAA→GGA) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,301,278 | A→C | 5.6% | D5E (GAT→GAG) ‡ | yrbN ← | uncharacterized protein |
| RA | 3,301,280 | C→G | 5.9% | D5H (GAT→CAT) ‡ | yrbN ← | uncharacterized protein |
| RA | 3,301,282 | G→T | 6.2% | A4D (GCT→GAT) | yrbN ← | uncharacterized protein |
| RA | 3,304,557 | A→G | 5.1% | intergenic (‑30/‑27) | pnp ← / → psrO | polynucleotide phosphorylase/polyadenylase/novel sRNA, function unknown |
| RA | 3,355,304 | Δ1 bp | 7.7% | intergenic (+5/‑167) | gltF → / → yhcA | periplasmic protein/putative periplasmic chaperone protein |
| RA | 3,355,309 | A→T | 7.1% | intergenic (+10/‑162) | gltF → / → yhcA | periplasmic protein/putative periplasmic chaperone protein |
| RA | 3,355,312:1 | +A | 7.0% | intergenic (+13/‑159) | gltF → / → yhcA | periplasmic protein/putative periplasmic chaperone protein |
| RA | 3,355,317 | T→C | 7.7% | intergenic (+18/‑154) | gltF → / → yhcA | periplasmic protein/putative periplasmic chaperone protein |
| RA | 3,414,688 | C→T | 5.4% | T2I (ACA→ATA) | yhdY → | putative amino‑acid transporter subunit |
| RA | 3,444,381 | Δ1 bp | 5.5% | coding (343/822 nt) | rplB ← | 50S ribosomal subunit protein L2 |
| RA | 3,448,816 | T→A | 5.6% | intergenic (‑59/‑121) | gspA ← / → gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| RA | 3,448,818 | A→T | 5.5% | intergenic (‑61/‑119) | gspA ← / → gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| RA | 3,448,820 | T→A | 5.4% | intergenic (‑63/‑117) | gspA ← / → gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| RA | 3,450,794 | C→A | 5.1% | I353I (ATC→ATA) | gspD → | general secretory pathway component, cryptic |
| RA | 3,519,197 | Δ1 bp | 5.2% | coding (312/561 nt) | nudE ← | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH |
| RA | 3,519,198 | Δ1 bp | 5.2% | coding (311/561 nt) | nudE ← | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH |
| RA | 3,565,958 | G→T | 5.3% | P302Q (CCA→CAA) | glgB ← | 1,4‑alpha‑glucan branching enzyme |
| RA | 3,631,331 | T→A | 5.4% | G110G (GGT→GGA) | pitA → | phosphate transporter, low‑affinity; tellurite importer |
| RA | 3,721,485 | T→G | 13.4% | Y416S (TAC→TCC) | xylB ← | xylulokinase |
| RA | 3,738,067 | C→A | 5.9% | P127H (CCC→CAC) | yiaM → | 2,3‑diketo‑L‑gulonate TRAP transporter small permease protein |
| RA | 3,908,605 | C→G | 5.2% | intergenic (‑45/+308) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,606 | T→A | 5.1% | intergenic (‑46/+307) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,615 | C→A | 5.4% | intergenic (‑55/+298) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,617 | A→G | 5.4% | intergenic (‑57/+296) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,618 | C→T | 5.4% | intergenic (‑58/+295) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,620 | T→G | 5.3% | intergenic (‑60/+293) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,981,063 | Δ1 bp | 6.5% | coding (180/1197 nt) | hemY ← | putative protoheme IX synthesis protein |
| RA | 4,027,755 | C→A | 5.4% | A417A (GCC→GCA) | trkH → | potassium transporter |
| RA | 4,027,793 | T→A | 5.8% | V430D (GTT→GAT) | trkH → | potassium transporter |
| RA | 4,063,817 | G→T | 7.0% | intergenic (‑56/+58) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,063,822 | T→A | 6.7% | intergenic (‑61/+53) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,063,823 | T→A | 7.1% | intergenic (‑62/+52) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,063,824 | T→A | 7.2% | intergenic (‑63/+51) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,063,829 | A→C | 7.7% | intergenic (‑68/+46) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,114,401 | G→A | 6.6% | intergenic (‑17/+139) | cytR ← / ← priA | Anti‑activator for CytR‑CRP nucleoside utilization regulon/Primosome factor n' (replication factor Y) |
| RA | 4,114,403 | A→G | 6.4% | intergenic (‑19/+137) | cytR ← / ← priA | Anti‑activator for CytR‑CRP nucleoside utilization regulon/Primosome factor n' (replication factor Y) |
| RA | 4,114,404 | C→T | 6.6% | intergenic (‑20/+136) | cytR ← / ← priA | Anti‑activator for CytR‑CRP nucleoside utilization regulon/Primosome factor n' (replication factor Y) |
| RA | 4,114,406 | T→C | 6.7% | intergenic (‑22/+134) | cytR ← / ← priA | Anti‑activator for CytR‑CRP nucleoside utilization regulon/Primosome factor n' (replication factor Y) |
| RA | 4,119,933 | G→A | 5.9% | L57L (TTG→TTA) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,119,936 | T→C | 6.0% | I58I (ATT→ATC) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,124,446 | C→A | 5.5% | N228K (AAC→AAA) | katG → | catalase‑peroxidase HPI, heme b‑containing |
| RA | 4,126,188 | C→A | 5.2% | L51L (CTC→CTA) | yijE → | EamA‑like transporter family protein |
| RA | 4,175,088 | A→T | 5.3% | K1306* (AAA→TAA) ‡ | rpoB → | RNA polymerase, beta subunit |
| RA | 4,175,089 | A→T | 5.1% | K1306I (AAA→ATA) ‡ | rpoB → | RNA polymerase, beta subunit |
| RA | 4,175,091 | A→T | 5.1% | N1307Y (AAC→TAC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,221,774 | A→T | 5.5% | intergenic (‑215/+38) | yjbD ← / ← lysC | DUF3811 family protein/lysine‑sensitive aspartokinase 3 |
| RA | 4,230,419 | A→T | 5.7% | E56V (GAG→GTG) | psiE → | phosphate starvation inducible protein |
| RA | 4,240,210 | A→T | 5.2% | A243A (GCA→GCT) | malM → | maltose regulon periplasmic protein |
| RA | 4,254,577 | T→C | 5.1% | N112N (AAT→AAC) | dnaB → | replicative DNA helicase |
| RA | 4,258,731 | T→A | 5.8% | intergenic (+496/+6) | tyrB → / ← yjbS | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/uncharacterized protein |
| RA | 4,258,738 | T→A | 6.2% | *68L (TAG→TTG) | yjbS ← | uncharacterized protein |
| RA | 4,273,158 | A→G | 5.3% | intergenic (‑155/+23) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
| RA | 4,273,159 | G→T | 5.8% | intergenic (‑156/+22) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
| RA | 4,273,160 | A→C | 5.8% | intergenic (‑157/+21) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
| RA | 4,273,161 | C→T | 5.8% | intergenic (‑158/+20) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
| RA | 4,296,677 | A→T | 6.3% | intergenic (‑263/+10) | yjcS ← / ← alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 29224 | 73 (0.870) | 4 (0.050) | 4/234 | NT | 5.8% | intergenic (+29/‑427) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| ? | CP009273 | = 29258 | 60 (0.760) | intergenic (+63/‑393) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase | |||||
| * | ? | CP009273 | = 47924 | 76 (0.910) | 4 (0.050) | 4/244 | NT | 5.1% | coding (156/1863 nt) | kefC | potassium:proton antiporter |
| ? | CP009273 | = 47952 | 75 (0.910) | coding (184/1863 nt) | kefC | potassium:proton antiporter | |||||
| * | ? | CP009273 | = 220861 | NA (NA) | 4 (0.050) | 3/234 | NT | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220890 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 266561 | NA (NA) | 4 (0.050) | 4/240 | NT | NA | coding (248/1152 nt) | insI1 | IS30 transposase |
| ? | CP009273 | = 266611 | NA (NA) | coding (298/1152 nt) | insI1 | IS30 transposase | |||||
| * | ? | CP009273 | = 270097 | NA (NA) | 4 (0.050) | 4/242 | NT | NA | noncoding (764/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 270129 | NA (NA) | noncoding (732/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 320483 | 74 (0.880) | 5 (0.060) | 4/246 | NT | 6.3% | coding (593/669 nt) | ykgH | putative inner membrane protein |
| ? | CP009273 | = 320527 | 76 (0.910) | coding (549/669 nt) | ykgH | putative inner membrane protein | |||||
| * | ? | CP009273 | = 327464 | 66 (0.790) | 4 (0.050) | 4/242 | NT | 5.6% | intergenic (+257/‑618) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| ? | CP009273 | = 327506 | 70 (0.850) | intergenic (+299/‑576) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase | |||||
| * | ? | CP009273 | 360104 = | 81 (0.970) | 104 (1.240) | 76/248 | NT | 56.2% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 377054 = | NA (NA) | 4 (0.050) | 4/240 | NT | NA | coding (248/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | 377085 = | NA (NA) | coding (279/366 nt) | insC1 | IS2 repressor TnpA | |||||
| * | ? | CP009273 | 377119 = | NA (NA) | 7 (0.090) | 6/234 | NT | NA | coding (313/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | 377159 = | NA (NA) | coding (353/366 nt) coding (30/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
|||||
| * | ? | CP009273 | 554190 = | 84 (1.000) | 4 (0.050) | 4/242 | NT | 5.1% | coding (523/543 nt) | sfmA | FimA homolog |
| ? | CP009273 | 554256 = | 68 (0.830) | intergenic (+46/‑174) | sfmA/sfmC | FimA homolog/putative periplasmic pilus chaperone | |||||
| * | ? | CP009273 | = 566923 | 76 (0.910) | 5 (0.060) | 4/236 | NT | 6.4% | noncoding (147/1258 nt) | IS3 | repeat region |
| ? | CP009273 | = 566987 | 73 (0.910) | noncoding (211/1258 nt) | IS3 | repeat region | |||||
| * | ? | CP009273 | = 606692 | 60 (0.710) | 6 (0.080) | 4/236 | NT | 9.1% | coding (1259/2241 nt) | fepA | iron‑enterobactin outer membrane transporter |
| ? | CP009273 | = 606712 | 63 (0.790) | coding (1239/2241 nt) | fepA | iron‑enterobactin outer membrane transporter | |||||
| * | ? | CP009273 | 677210 = | 65 (0.770) | 4 (0.050) | 3/236 | NT | 6.6% | coding (1640/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| ? | CP009273 | 677239 = | 52 (0.650) | coding (1611/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription | |||||
| * | ? | CP009273 | 687125 = | 75 (0.890) | 4 (0.050) | 3/240 | NT | 5.2% | coding (116/879 nt) | ybeX | putative ion transport |
| ? | CP009273 | 687171 = | 73 (0.900) | coding (70/879 nt) | ybeX | putative ion transport | |||||
| * | ? | CP009273 | 736438 = | NA (NA) | 7 (0.090) | 7/236 | NT | 6.7% | noncoding (29/106 nt) | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 736485 = | 98 (1.230) | noncoding (76/106 nt) | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1000738 = | 61 (0.730) | 4 (0.050) | 4/238 | NT | 6.2% | coding (515/1011 nt) | pyrD | dihydro‑orotate oxidase, FMN‑linked |
| ? | CP009273 | 1000782 = | 62 (0.770) | coding (559/1011 nt) | pyrD | dihydro‑orotate oxidase, FMN‑linked | |||||
| * | ? | CP009273 | = 1099270 | 54 (0.640) | 4 (0.050) | 4/238 | NT | 6.1% | intergenic (‑618/‑137) | csgD/csgB | csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex |
| ? | CP009273 | = 1099322 | 71 (0.880) | intergenic (‑670/‑85) | csgD/csgB | csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex | |||||
| * | ? | CP009273 | 1179139 = | 80 (0.950) | 4 (0.050) | 4/234 | NT | 5.0% | coding (762/828 nt) | potB | polyamine transporter subunit |
| ? | CP009273 | 1179161 = | 76 (0.960) | coding (740/828 nt) | potB | polyamine transporter subunit | |||||
| * | ? | CP009273 | 1203246 = | 83 (0.990) | 9 (0.120) | 9/216 | NT | 12.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 49 (0.670) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1218589 | 78 (0.930) | 4 (0.050) | 4/238 | NT | 5.2% | coding (31/174 nt) | ymgI | uncharacterized protein |
| ? | CP009273 | = 1218636 | 70 (0.870) | intergenic (‑17/‑84) | ymgI/ymgJ | uncharacterized protein/uncharacterized protein | |||||
| * | ? | CP009273 | = 1240402 | 55 (0.660) | 4 (0.050) | 4/234 | NT | 6.3% | coding (219/255 nt) | ymgE | UPF0410 family putative inner membrane protein |
| ? | CP009273 | = 1240430 | 68 (0.860) | coding (247/255 nt) | ymgE | UPF0410 family putative inner membrane protein | |||||
| * | ? | CP009273 | 1301355 = | 69 (0.820) | 4 (0.050) | 4/238 | NT | 5.9% | coding (53/330 nt) | yciU | UPF0263 family protein |
| ? | CP009273 | 1301386 = | 61 (0.760) | coding (22/330 nt) | yciU | UPF0263 family protein | |||||
| * | ? | CP009273 | 1371971 = | 87 (1.040) | 4 (0.050) | 4/240 | NT | 5.2% | coding (883/1056 nt) | ycjS | putative NADH‑binding oxidoreductase |
| ? | CP009273 | 1372015 = | 62 (0.760) | coding (927/1056 nt) | ycjS | putative NADH‑binding oxidoreductase | |||||
| * | ? | CP009273 | 1392329 = | 71 (0.850) | 4 (0.050) | 4/236 | NT | 5.7% | coding (551/951 nt) | uspE | stress‑induced protein |
| ? | CP009273 | 1392394 = | 65 (0.810) | coding (486/951 nt) | uspE | stress‑induced protein | |||||
| * | ? | CP009273 | = 1489387 | 78 (0.930) | 4 (0.050) | 4/240 | NT | 5.0% | intergenic (‑59/‑158) | ydcI/ydcJ | putative DNA‑binding transcriptional regulator/putative metalloenzyme |
| ? | CP009273 | = 1489424 | 76 (0.940) | intergenic (‑96/‑121) | ydcI/ydcJ | putative DNA‑binding transcriptional regulator/putative metalloenzyme | |||||
| * | ? | CP009273 | 1665377 = | 62 (0.740) | 5 (0.060) | 3/240 | NT | 7.3% | intergenic (+168/‑256) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein |
| ? | CP009273 | 1665422 = | 67 (0.830) | intergenic (+213/‑211) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | CP009273 | 1719720 = | 67 (0.800) | 4 (0.050) | 4/238 | NT | 6.0% | coding (170/897 nt) | ydhF | putative oxidoreductase |
| ? | CP009273 | 1719751 = | 62 (0.770) | coding (139/897 nt) | ydhF | putative oxidoreductase | |||||
| * | ? | CP009273 | = 1770478 | 72 (0.860) | 5 (0.060) | 3/242 | NT | 6.4% | coding (635/1596 nt) | ydiF | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
| ? | CP009273 | = 1770520 | 75 (0.920) | coding (677/1596 nt) | ydiF | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit | |||||
| * | ? | CP009273 | = 1781631 | 68 (0.810) | 4 (0.050) | 4/230 | NT | 6.0% | intergenic (‑262/‑71) | ppsA/ppsR | phosphoenolpyruvate synthase/bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase |
| ? | CP009273 | = 1781674 | 63 (0.810) | intergenic (‑305/‑28) | ppsA/ppsR | phosphoenolpyruvate synthase/bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase | |||||
| * | ? | CP009273 | = 1815624 | 61 (0.730) | 6 (0.070) | 6/238 | NT | 8.8% | coding (253/321 nt) | chbB | N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS |
| ? | CP009273 | = 1815682 | 66 (0.820) | coding (195/321 nt) | chbB | N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS | |||||
| * | ? | CP009273 | = 2055638 | 69 (0.820) | 4 (0.050) | 4/238 | NT | 5.5% | intergenic (‑224/‑103) | nac/asnV | nitrogen assimilation regulon transcriptional regulator; autorepressor/tRNA‑Asn |
| ? | CP009273 | = 2055684 | 70 (0.870) | intergenic (‑270/‑57) | nac/asnV | nitrogen assimilation regulon transcriptional regulator; autorepressor/tRNA‑Asn | |||||
| * | ? | CP009273 | 2058508 = | 89 (1.060) | 5 (0.060) | 3/240 | NT | 6.1% | coding (196/744 nt) | cobS | cobalamin synthase |
| ? | CP009273 | 2058545 = | 69 (0.850) | coding (159/744 nt) | cobS | cobalamin synthase | |||||
| * | ? | CP009273 | = 2075985 | 60 (0.710) | 4 (0.050) | 4/236 | NT | 5.7% | coding (44/1167 nt) | dacD | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6b) |
| ? | CP009273 | = 2076074 | 76 (0.950) | intergenic (‑46/‑163) | dacD/sbcB | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6b)/exodeoxyribonuclease I; exonuclease I | |||||
| * | ? | CP009273 | = 2131296 | 79 (0.940) | 4 (0.050) | 4/234 | NT | 5.0% | intergenic (‑572/‑87) | wza/yegH | colanic acid export protein; outer membrane auxillary lipoprotein/inner membrane protein |
| ? | CP009273 | = 2131324 | 76 (0.960) | intergenic (‑600/‑59) | wza/yegH | colanic acid export protein; outer membrane auxillary lipoprotein/inner membrane protein | |||||
| * | ? | CP009273 | 2380354 = | 63 (0.750) | 4 (0.050) | 4/232 | NT | 6.1% | intergenic (+44/‑59) | yfbL/yfbM | putative peptidase/DUF1877 family protein |
| ? | CP009273 | 2380414 = | 65 (0.830) | coding (2/504 nt) | yfbM | DUF1877 family protein | |||||
| * | ? | CP009273 | 2456411 = | 59 (0.700) | 4 (0.050) | 4/238 | NT | 6.0% | intergenic (+286/‑80) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| ? | CP009273 | 2456507 = | 69 (0.860) | coding (17/1059 nt) | yfdF | uncharacterized protein | |||||
| * | ? | CP009273 | 2531914 = | NA (NA) | 6 (0.080) | 4/236 | NT | 6.0% | noncoding (21/98 nt) | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 2531977 = | 94 (1.180) | noncoding (84/98 nt) | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 2584399 = | 67 (0.800) | 4 (0.050) | 4/238 | NT | 5.7% | intergenic (‑174/‑207) | ypfM/yffB | stress‑induced small enterobacterial protein/putative ArsC family reductase |
| ? | CP009273 | 2584449 = | 69 (0.860) | intergenic (‑224/‑157) | ypfM/yffB | stress‑induced small enterobacterial protein/putative ArsC family reductase | |||||
| * | ? | CP009273 | = 2593231 | 86 (1.020) | 6 (0.080) | 4/236 | NT | 6.6% | intergenic (‑112/‑34) | dapA/gcvR | dihydrodipicolinate synthase/transcriptional repressor, regulatory protein accessory to GcvA |
| ? | CP009273 | = 2593250 | 89 (1.110) | intergenic (‑131/‑15) | dapA/gcvR | dihydrodipicolinate synthase/transcriptional repressor, regulatory protein accessory to GcvA | |||||
| * | ? | CP009273 | 2645696 = | 91 (1.080) | 5 (0.060) | 4/236 | NT | 5.8% | intergenic (‑50/‑157) | yfhM/sseA | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein/3‑mercaptopyruvate sulfurtransferase |
| ? | CP009273 | 2645732 = | 75 (0.940) | intergenic (‑86/‑121) | yfhM/sseA | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein/3‑mercaptopyruvate sulfurtransferase | |||||
| * | ? | CP009273 | = 2700487 | 61 (0.730) | 4 (0.050) | 4/240 | NT | 6.2% | intergenic (‑4/+194) | lepA/rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component; with RsxABCDEG |
| ? | CP009273 | = 2700522 | 61 (0.750) | intergenic (‑39/+159) | lepA/rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component; with RsxABCDEG | |||||
| * | ? | CP009273 | = 2720783 | NA (NA) | 3 (0.040) | 3/240 | NT | NA | noncoding (1761/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | = 2720833 | NA (NA) | noncoding (1711/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 2721928 = | NA (NA) | 4 (0.050) | 4/238 | NT | NA | noncoding (616/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721954 = | NA (NA) | noncoding (590/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 2766700 | 76 (0.910) | 4 (0.050) | 4/230 | NT | 5.5% | coding (24/1704 nt) | yfjW | CP4‑57 prophage; putative inner membrane protein |
| ? | CP009273 | = 2766791 | 67 (0.860) | coding (115/1704 nt) | yfjW | CP4‑57 prophage; putative inner membrane protein | |||||
| * | ? | CP009273 | = 2781380 | 66 (0.790) | 4 (0.050) | 4/236 | NT | 5.6% | pseudogene (1625/2253 nt) | ygaQ | uncharacterized protein; putative enzyme |
| ? | CP009273 | = 2781437 | 73 (0.910) | pseudogene (1682/2253 nt) | ygaQ | uncharacterized protein; putative enzyme | |||||
| * | ? | CP009273 | 2790404 = | 74 (0.880) | 4 (0.050) | 4/230 | NT | 5.7% | intergenic (‑17/‑166) | yqaE/ygaV | cyaR sRNA‑regulated protein/tributyltin‑inducible repressor of ygaVP |
| ? | CP009273 | 2790456 = | 65 (0.840) | intergenic (‑69/‑114) | yqaE/ygaV | cyaR sRNA‑regulated protein/tributyltin‑inducible repressor of ygaVP | |||||
| * | ? | CP009273 | = 2908168 | 95 (1.130) | 8 (0.100) | 7/246 | NT | 8.3% | coding (192/1302 nt) | rlmD | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
| ? | CP009273 | = 2908214 | 83 (1.000) | coding (146/1302 nt) | rlmD | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | 2969093 = | 57 (0.680) | 3 (0.040) | 3/242 | NT | 5.4% | coding (281/2160 nt) | aas | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
| ? | CP009273 | 2969136 = | 50 (0.610) | coding (238/2160 nt) | aas | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase | |||||
| * | ? | CP009273 | 3039255 = | 75 (0.890) | 4 (0.050) | 4/238 | NT | 5.5% | coding (6/744 nt) | ygfF | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| ? | CP009273 | 3039321 = | 65 (0.810) | intergenic (‑61/+206) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex | |||||
| * | ? | CP009273 | 3050391 = | 74 (0.880) | 4 (0.050) | 4/234 | NT | 5.8% | intergenic (+44/+146) | sibC/serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| ? | CP009273 | 3050429 = | 61 (0.770) | intergenic (+82/+108) | sibC/serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase | |||||
| * | ? | CP009273 | = 3112664 | 81 (0.970) | 5 (0.060) | 5/240 | NT | 6.0% | intergenic (‑193/+292) | yghJ/glcA | DUF4092 family putative lipoprotein peptidase/glycolate transporter |
| ? | CP009273 | = 3112706 | 79 (0.970) | intergenic (‑235/+250) | yghJ/glcA | DUF4092 family putative lipoprotein peptidase/glycolate transporter | |||||
| * | ? | CP009273 | 3143761 = | 55 (0.660) | 3 (0.040) | 3/236 | NT | 5.4% | coding (741/885 nt) | yghA | putative oxidoreductase |
| ? | CP009273 | 3143800 = | 53 (0.660) | coding (780/885 nt) | yghA | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3211169 | 73 (0.870) | 6 (0.070) | 6/238 | NT | 7.2% | coding (1267/1521 nt) | aer | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| ? | CP009273 | = 3211189 | 85 (1.060) | coding (1247/1521 nt) | aer | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component | |||||
| * | ? | CP009273 | 3261408 = | 59 (0.700) | 6 (0.070) | 4/242 | NT | 8.9% | coding (196/540 nt) | yhaB | uncharacterized protein |
| ? | CP009273 | 3261456 = | 65 (0.790) | coding (244/540 nt) | yhaB | uncharacterized protein | |||||
| * | ? | CP009273 | 3346387 = | 93 (1.110) | 4 (0.050) | 4/230 | NT | 5.2% | intergenic (‑3/+93) | arcB/yhcC | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB/putative Fe‑S oxidoreductase, Radical SAM superfamily protein |
| ? | CP009273 | 3346471 = | 61 (0.780) | intergenic (‑87/+9) | arcB/yhcC | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB/putative Fe‑S oxidoreductase, Radical SAM superfamily protein | |||||
| * | ? | CP009273 | 3616997 = | 55 (0.660) | 4 (0.050) | 4/244 | NT | 6.2% | coding (239/384 nt) | yhhH | putative immunity protein for putative polymorphic toxin RhsB |
| ? | CP009273 | 3617089 = | 67 (0.810) | coding (331/384 nt) | yhhH | putative immunity protein for putative polymorphic toxin RhsB | |||||
| * | ? | CP009273 | 3735519 = | 70 (0.830) | 4 (0.050) | 4/240 | NT | 5.4% | coding (374/849 nt) | yiaJ | transcriptional repressor of yiaK‑S operon |
| ? | CP009273 | 3735556 = | 72 (0.890) | coding (337/849 nt) | yiaJ | transcriptional repressor of yiaK‑S operon | |||||
| * | ? | CP009273 | 3791932 = | 70 (0.830) | 6 (0.070) | 6/238 | NT | 8.4% | coding (741/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | CP009273 | 3791991 = | 63 (0.780) | coding (682/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
| * | ? | CP009273 | = 3798819 | 95 (1.130) | 6 (0.070) | 5/238 | NT | 6.2% | coding (492/798 nt) | waaP | kinase that phosphorylates core heptose of lipopolysaccharide |
| ? | CP009273 | = 3798851 | 89 (1.110) | coding (460/798 nt) | waaP | kinase that phosphorylates core heptose of lipopolysaccharide | |||||
| * | ? | CP009273 | 3812071 = | 78 (0.930) | 4 (0.050) | 4/234 | NT | 5.3% | intergenic (+127/‑163) | dinD/yicG | DNA damage‑inducible protein/UPF0126 family inner membrane protein |
| ? | CP009273 | 3812107 = | 69 (0.870) | intergenic (+163/‑127) | dinD/yicG | DNA damage‑inducible protein/UPF0126 family inner membrane protein | |||||
| * | ? | CP009273 | = 4212511 | 81 (0.970) | 4 (0.050) | 4/234 | NT | 5.2% | intergenic (‑96/+221) | arpA/iclR | ankyrin repeat protein/transcriptional repressor |
| ? | CP009273 | = 4212557 | 70 (0.880) | intergenic (‑142/+175) | arpA/iclR | ankyrin repeat protein/transcriptional repressor | |||||
| * | ? | CP009273 | 4272733 = | 83 (0.990) | 6 (0.080) | 4/234 | NT | 7.2% | coding (271/1293 nt) | yjcF | pentapeptide repeats protein |
| ? | CP009273 | 4272794 = | 77 (0.970) | coding (210/1293 nt) | yjcF | pentapeptide repeats protein | |||||
| * | ? | CP009273 | = 4332649 | 77 (0.920) | 6 (0.080) | 4/232 | NT | 7.2% | coding (922/1356 nt) | melA | alpha‑galactosidase, NAD(P)‑binding |
| ? | CP009273 | = 4332705 | 82 (1.050) | coding (978/1356 nt) | melA | alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | CP009273 | 4335252 = | 73 (0.870) | 5 (0.060) | 5/238 | NT | 6.8% | coding (124/630 nt) | yjdF | DUF2238 family inner membrane protein |
| ? | CP009273 | 4335282 = | 67 (0.830) | coding (94/630 nt) | yjdF | DUF2238 family inner membrane protein | |||||
| * | ? | CP009273 | 4467077 = | 67 (0.800) | 4 (0.050) | 4/228 | NT | 6.3% | intergenic (+9/+47) | yjgL/argI | uncharacterized protein/ornithine carbamoyltransferase 1 |
| ? | CP009273 | 4467108 = | 57 (0.740) | intergenic (+40/+16) | yjgL/argI | uncharacterized protein/ornithine carbamoyltransferase 1 | |||||
| * | ? | CP009273 | 4478286 = | NA (NA) | 4 (0.050) | 4/242 | NT | NA | intergenic (+69/+92) | lptG/yjgR | lipopolysaccharide export ABC permease of the LptBFGC export complex/DUF853 family protein with NTPase fold |
| ? | CP009273 | 4478318 = | NA (NA) | intergenic (+101/+60) | lptG/yjgR | lipopolysaccharide export ABC permease of the LptBFGC export complex/DUF853 family protein with NTPase fold | |||||
| * | ? | CP009273 | 4520333 = | 68 (0.810) | 4 (0.050) | 4/236 | NT | 5.6% | coding (18/279 nt) | sgcB | putative enzyme IIB component of PTS |
| ? | CP009273 | 4520370 = | 69 (0.860) | coding (1099/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| * | ? | CP009273 | = 4570270 | 67 (0.800) | 4 (0.050) | 4/232 | NT | 5.9% | coding (1010/1395 nt) | hsdS | specificity determinant for hsdM and hsdR |
| ? | CP009273 | = 4570355 | 66 (0.840) | coding (925/1395 nt) | hsdS | specificity determinant for hsdM and hsdR | |||||