mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 35.6% | 44.7 / 54.3 | 104 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 1,160,027 | 0 | A | C | 30.3% | 183.8 / 19.8 | 99 | K159N (AAA→AAC) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 838,652 | 0 | T | G | 29.0% | 190.9 / 29.5 | 124 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 357,031 | 0 | C | A | 25.6% | 153.1 / 11.5 | 86 | V181F (GTT→TTT) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 838,693 | 0 | T | G | 25.0% | 286.2 / 13.8 | 125 | R302R (CGT→CGG) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,170,746 | 0 | C | A | 25.0% | 162.7 / 16.4 | 106 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 357,034 | 0 | G | C | 24.4% | 196.0 / 14.7 | 86 | R180G (CGG→GGG) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 1,828,727 | 0 | G | C | 23.5% | 246.5 / 13.6 | 101 | E119Q (GAA→CAA) | ydjY | putative ferrodoxin‑like lipoprotein |
| * | CP009273 | 2,170,724 | 0 | G | T | 22.9% | 110.1 / 15.2 | 100 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 1,160,024 | 0 | G | C | 22.7% | 207.5 / 17.1 | 101 | M158I (ATG→ATC) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 1,160,002 | 0 | A | T | 22.3% | 223.1 / 13.6 | 97 | D151V (GAT→GTT) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 104,041 | 0 | G | T | 20.6% | 133.2 / 10.3 | 63 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 104,042 | 0 | A | T | 20.0% | 172.5 / 12.7 | 60 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 84 (0.680) | 5 (0.040) | 5/250 | 7.6 | 6.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 70 (0.600) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 1161581 | 114 (0.920) | 4 (0.040) | 4/238 | 7.9 | 3.5% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 121 (1.100) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | 3086131 = | 68 (0.550) | 3 (0.020) | 3/260 | 9.0 | 3.5% | coding (895/951 nt) | gshB | glutathione synthetase |
| ? | CP009273 | 3215942 = | 99 (0.820) | intergenic (+134/‑50) | ebgR/ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit | |||||
| * | ? | CP009273 | 2605077 = | 121 (0.970) | 3 (0.020) | 3/260 | 9.0 | 2.6% | coding (262/414 nt) | hyfJ | putative processing element hydrogenase 4 |
| ? | CP009273 | 2605264 = | 104 (0.860) | coding (6/2013 nt) | hyfR | hydrogenase‑4 transcriptional activator | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 3 (0.030) +AATTC |
3/258 | 9.0 | 2.1% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 146 (1.180) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | = 1222166 | 92 (0.740) | 3 (0.020) | 3/262 | 9.1 | 3.3% | coding (111/369 nt) | ycgJ | uncharacterized protein |
| ? | CP009273 | 1222170 = | 88 (0.730) | coding (115/369 nt) | ycgJ | uncharacterized protein | |||||
| * | ? | CP009273 | = 665338 | 104 (0.840) | 3 (0.020) | 3/264 | 9.1 | 2.2% | coding (26/612 nt) | cobC | putative alpha‑ribazole‑5'‑P phosphatase |
| ? | CP009273 | = 665507 | 160 (1.310) | coding (522/642 nt) | nadD | nicotinic acid mononucleotide adenylyltransferase, NAD(P)‑dependent | |||||
| * | ? | CP009273 | 592877 = | 126 (1.010) | 3 (0.020) | 3/264 | 9.1 | 2.2% | coding (291/333 nt) | cusF | periplasmic copper‑ and silver‑binding protein |
| ? | CP009273 | = 593125 | 139 (1.140) | coding (191/1224 nt) | cusB | copper/silver efflux system, membrane fusion protein | |||||
| * | ? | CP009273 | = 89407 | 152 (1.220) | 3 (0.020) | 3/262 | 9.1 | 2.1% | coding (1508/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) |
| ? | CP009273 | = 368198 | 137 (1.130) | coding (628/810 nt) | mhpD | 2‑keto‑4‑pentenoate hydratase | |||||
| * | ? | CP009273 | = 4323117 | 147 (1.180) | 3 (0.020) | 3/268 | 9.2 | 2.2% | coding (651/669 nt) | basR | response regulator in two‑component regulatory system with BasS |
| ? | CP009273 | 4323122 = | 126 (1.010) | coding (646/669 nt) | basR | response regulator in two‑component regulatory system with BasS | |||||