mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 36.5% | 69.3 / 47.3 | 115 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 1,160,024 | 0 | G | C | 31.9% | 135.9 / 11.5 | 77 | M158I (ATG→ATC) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 2,178,908 | 0 | T | G | 26.3% | 177.4 / 15.5 | 95 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 838,652 | 0 | T | G | 25.2% | 302.2 / 28.7 | 151 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,998,305 | 0 | G | T | 22.7% | 235.9 / 16.3 | 129 | Q281K (CAA→AAA) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 4,234,527 | 0 | C | G | 22.0% | 285.7 / 11.1 | 122 | L159L (CTG→CTC) | malF | maltose transporter subunit |
| * | CP009273 | 1,159,992 | 0 | C | G | 21.6% | 170.0 / 15.8 | 74 | R148G (CGG→GGG) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 104,042 | 0 | A | T | 21.3% | 219.5 / 11.5 | 76 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 838,658 | 0 | G | T | 20.1% | 291.5 / 26.2 | 149 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 277,680 | 0 | C | A | 20.0% | 186.1 / 14.3 | 115 | M5I (ATG→ATT) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776778 | 131 (0.970) | 4 (0.030) | 3/228 | 8.0 | 4.1% | intergenic (+100/‑47) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | 777111 = | 76 (0.660) | intergenic (+3/‑430) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | 3499207 = | 152 (1.120) | 3 (0.020) | 3/252 | 8.5 | 1.9% | coding (173/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | CP009273 | 4049721 = | 167 (1.310) | intergenic (‑22/+264) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase | |||||
| * | ? | CP009273 | 2990619 = | NA (NA) | 3 (0.020) | 3/266 | 8.8 | 2.7% | noncoding (432/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 3049622 = | 110 (0.810) | coding (23/549 nt) | fau | 5‑formyltetrahydrofolate cyclo‑ligase family protein | |||||
| * | ? | CP009273 | 2340638 = | NA (NA) | 3 (0.020) | 3/268 | 8.9 | 2.2% | intergenic (+9/‑225) | nrdA/nrdB | ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| ? | CP009273 | 3227276 = | 132 (0.980) | coding (228/417 nt) | higA | antitoxinof the HigB‑HigA toxin‑antitoxin system | |||||