mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,171,206 | 0 | C | T | 64.9% | 99.5 / 95.9 | 94 | R12C (CGT→TGT) | rpoB | RNA polymerase, beta subunit |
| * | CP009273 | 221,952 | 0 | A | C | 44.4% | 6.5 / 20.4 | 18 | intergenic (+8/‑35) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | CP009273 | 221,953 | 0 | C | G | 42.1% | 10.8 / 22.2 | 19 | intergenic (+9/‑34) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | CP009273 | 221,954 | 0 | G | T | 42.1% | 10.1 / 18.8 | 19 | intergenic (+10/‑33) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | CP009273 | 4,247,014 | 0 | C | A | 36.8% | 83.4 / 89.2 | 87 | intergenic (+81/‑29) | dgkA/lexA | diacylglycerol kinase/transcriptional repressor of SOS regulon |
| * | CP009273 | 2,349,859 | 0 | A | C | 21.1% | 148.6 / 34.5 | 76 | K287T (AAA→ACA) | glpC | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster |
| * | CP009273 | 2,170,734 | 0 | G | T | 20.5% | 137.8 / 14.2 | 78 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Marginal new junction evidence (lowest skew 10 of 236 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2060067 = | 32 (0.370) | 31 (0.370) | 24/262 | 4.0 | 50.3% | noncoding (768/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2095768 = | NA (NA) | noncoding (657/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270093 = | NA (NA) | 31 (0.370) | 24/262 | 4.0 | NA | noncoding (768/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 270204 = | NA (NA) | noncoding (657/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 377428 = | NA (NA) | 29 (0.340) | 23/264 | 4.3 | NA | coding (299/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377513 = | NA (NA) | coding (384/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | 1422389 = | 68 (0.780) | 29 (0.350) | 22/262 | 4.4 | 38.4% | noncoding (663/1196 nt) | IS5 | repeat region |
| ? | CP009273 | 2060073 = | 28 (0.330) | noncoding (762/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 1391062 | NA (NA) | 29 (0.350) | 22/262 | 4.4 | 30.8% | coding (730/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | 1422389 = | 68 (0.780) | noncoding (663/1196 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 269746 = | NA (NA) | 22 (0.260) | 19/270 | 5.3 | NA | noncoding (1115/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269797 = | NA (NA) | noncoding (1064/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 224344 | NA (NA) | 19 (0.230) | 16/262 | 5.9 | NA | noncoding (2099/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224427 | NA (NA) | noncoding (2182/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 3128772 | 104 (1.190) | 20 (0.240) | 15/256 | 6.0 | 18.2% | coding (959/1500 nt) | pitB | phosphate transporter |
| ? | CP009273 | = 3128845 | 83 (1.020) | coding (886/1500 nt) | pitB | phosphate transporter | |||||
| * | ? | CP009273 | 266551 = | NA (NA) | 16 (0.190) | 15/264 | 6.2 | NA | coding (238/1152 nt) | insI1 | IS30 transposase |
| ? | CP009273 | 266623 = | NA (NA) | coding (310/1152 nt) | insI1 | IS30 transposase | |||||
| * | ? | CP009273 | 3937006 = | NA (NA) | 17 (0.200) | 15/266 | 6.3 | NA | intergenic (+136/‑58) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | CP009273 | 3937076 = | NA (NA) | noncoding (13/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||