mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 60 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,177,245 | 0 | G | T | 59.5% | ‑3.3 / 22.1 | 38 | intergenic (‑41/+267) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 2,470,427 | 0 | C | A | 58.8% | 13.2 / 36.7 | 35 | Q433K (CAA→AAA) | yfdI | CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase |
| * | NC_000913 | 454,926 | 0 | G | A | 56.5% | ‑0.2 / 23.1 | 39 | intergenic (+137/‑207) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 708,004 | 0 | C | A | 54.5% | 27.2 / 45.0 | 34 | intergenic (+247/‑330) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 2,470,436 | 0 | C | A | 52.9% | 18.7 / 39.5 | 35 | Q436K (CAA→AAA) | yfdI | CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase |
| * | NC_000913 | 454,933 | 0 | T | A | 52.5% | ‑4.0 / 26.2 | 40 | intergenic (+144/‑200) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 707,981 | 0 | C | G | 52.4% | 10.2 / 28.6 | 31 | intergenic (+224/‑353) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 454,919 | 0 | G | T | 51.4% | 18.9 / 34.4 | 38 | intergenic (+130/‑214) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 2,177,221 | 0 | T | G | 51.4% | 6.2 / 36.6 | 35 | intergenic (‑17/+291) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 4,378,973 | 0 | G | C | 50.0% | ‑4.0 / 18.2 | 31 | intergenic (‑29/+34) | ampC/frdD | beta‑lactamase/fumarate reductase membrane protein FrdD |
| * | NC_000913 | 454,877 | 0 | A | T | 47.1% | 2.6 / 19.4 | 39 | intergenic (+88/‑256) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 3,455,680 | 0 | G | T | 46.2% | 33.4 / 14.0 | 40 | V35L (GTG→TTG) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 2,177,255 | 0 | G | T | 45.6% | 31.6 / 21.8 | 46 | intergenic (‑51/+257) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 454,873 | 0 | C | G | 45.2% | 0.9 / 19.0 | 37 | intergenic (+84/‑260) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 454,934 | 0 | A | C | 45.0% | 18.0 / 17.6 | 40 | intergenic (+145/‑199) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 984,064 | 0 | T | G | 39.5% | 31.4 / 12.2 | 43 | F139V (TTT→GTT) | gloC | hydroxyacylglutathione hydrolase GloC |
| * | NC_000913 | 3,455,671 | 0 | A | T | 38.1% | 38.0 / 15.5 | 42 | I32F (ATT→TTT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 3,455,677 | 0 | A | T | 38.1% | 32.0 / 21.3 | 42 | N34Y (AAT→TAT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 1,331,179 | 0 | C | A | 37.5% | 66.2 / 14.3 | 48 | A44A (GCC→GCA) | topA | DNA topoisomerase 1 |
| * | NC_000913 | 3,407,970 | 0 | C | G | 37.0% | 24.7 / 14.5 | 27 | L122V (CTT→GTT) | panF | pantothenate:Na(+) symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4498181 = | NA (NA) | 7 (0.110) | 6/256 | 4.9 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4499512 | NA (NA) | intergenic (+12/+81) | insD‑6/yjgX | KpLE2 phage‑like element; IS2 insertion element protein InsB/KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment | |||||
| * | ? | NC_000913 | 381258 = | NA (NA) | 8 (0.130) | 6/254 | 4.9 | NA | pseudogene (3/417 nt) | yaiX | putative acyltransferase, N‑terminal fragment |
| ? | NC_000913 | = 382589 | NA (NA) | noncoding (1330/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1467910 = | NA (NA) | 5 (0.080) | 5/256 | 5.3 | NA | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1469242 | NA (NA) | intergenic (‑93/‑4) | insC‑2/ydbA | IS2 insertion element repressor InsA/putative outer membrane protein, N‑terminal fragment | |||||
| * | ? | NC_000913 | 1467910 = | NA (NA) | 10 (0.160) | 5/256 | 5.3 | NA | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1469241 | NA (NA) | intergenic (‑92/‑5) | insC‑2/ydbA | IS2 insertion element repressor InsA/putative outer membrane protein, N‑terminal fragment | |||||
| * | ? | NC_000913 | = 1041392 | 52 (0.840) | 3 (0.050) | 3/238 | 6.0 | 5.6% | coding (776/1299 nt) | appA | periplasmic phosphoanhydride phosphatase/multiple inositol‑polyphosphate phosphatase |
| ? | NC_000913 | = 3013051 | 53 (0.930) | coding (1189/1626 nt) | yqeB | XdhC‑CoxI family protein YqeB | |||||
| * | ? | NC_000913 | = 4412474 | 57 (0.930) | 3 (0.050) | 3/256 | 6.3 | 4.9% | coding (88/639 nt) | yjfM | DUF1190 domain‑containing protein YjfM |
| ? | NC_000913 | 4412478 = | 60 (0.970) | coding (92/639 nt) | yjfM | DUF1190 domain‑containing protein YjfM | |||||