mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 31 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,636,442 | 0 | C | G | 62.5% | ‑0.6 / 25.4 | 33 | intergenic (‑75/‑314) | nohA/ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| * | NC_000913 | 707,981 | 0 | C | G | 61.5% | ‑4.4 / 11.3 | 19 | intergenic (+224/‑353) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 454,919 | 0 | G | T | 60.9% | 11.8 / 27.1 | 25 | intergenic (+130/‑214) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 1,636,447 | 0 | C | G | 56.2% | 12.7 / 35.7 | 33 | intergenic (‑80/‑309) | nohA/ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| * | NC_000913 | 2,177,234 | 0 | C | A | 54.2% | ‑3.4 / 14.2 | 36 | intergenic (‑30/+278) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 707,984 | 0 | C | G | 52.6% | 3.9 / 17.7 | 19 | intergenic (+227/‑350) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 1,097,092 | 0 | T | C | 50.0% | ‑6.2 / 15.6 | 20 | intergenic (+263/+473) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| * | NC_000913 | 2,177,228 | 0 | C | G | 50.0% | ‑0.8 / 18.8 | 39 | intergenic (‑24/+284) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 1,636,440 | 0 | T | G | 48.6% | 24.6 / 18.5 | 35 | intergenic (‑73/‑316) | nohA/ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| * | NC_000913 | 2,177,255 | 0 | G | T | 46.3% | ‑5.7 / 30.3 | 41 | intergenic (‑51/+257) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 3,004,946 | 0 | G | T | 46.0% | 32.2 / 27.6 | 50 | Q281K (CAA→AAA) | ygeV | putative sigma(54)‑dependent transcriptional regulator YgeV |
| * | NC_000913 | 1,636,460 | 0 | A | T | 44.1% | 35.9 / 14.9 | 35 | intergenic (‑93/‑296) | nohA/ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| * | NC_000913 | 3,828,986 | 0 | T | G | 44.1% | 6.6 / 11.1 | 36 | V14V (GTT→GTG) | xanP | xanthine:H(+) symporter XanP |
| * | NC_000913 | 237,000 | 0 | T | G | 42.9% | 18.2 / 12.3 | 28 | noncoding (70/77 nt) | aspV | tRNA‑Asp |
| * | NC_000913 | 1,636,452 | 0 | C | G | 40.0% | 27.8 / 15.3 | 37 | intergenic (‑85/‑304) | nohA/ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| * | NC_000913 | 2,177,221 | 0 | T | G | 39.5% | 18.7 / 14.7 | 38 | intergenic (‑17/+291) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 3,455,680 | 0 | G | T | 39.4% | 28.5 / 10.1 | 33 | V35L (GTG→TTG) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 2,177,261 | 0 | A | T | 37.5% | 61.8 / 22.8 | 48 | intergenic (‑57/+251) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 3,455,677 | 0 | A | T | 37.1% | 34.1 / 13.8 | 35 | N34Y (AAT→TAT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 2,470,411 | 0 | A | T | 34.5% | 35.2 / 11.1 | 30 | L427F (TTA→TTT) | yfdI | CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase |