mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_vch_tpiA | 4,296,090 | 0 | C | T | 28.8% | 72.4 / 39.9 | 66 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 90 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 998439 = | 30 (0.630) | 5 (0.110) | 5/268 | 6.0 | 14.5% | noncoding (998439/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 998461 = | 31 (0.690) | noncoding (998461/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 3090373 | 42 (0.880) | 5 (0.110) | 5/272 | 6.1 | 11.9% | noncoding (3090373/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 3090384 | 34 (0.750) | noncoding (3090384/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3423376 = | 50 (1.050) | 7 (0.150) | 5/282 | 6.3 | 12.1% | noncoding (3423376/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4213192 | 52 (1.110) | noncoding (4213192/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 4542720 | 23 (0.480) | 4 (0.090) | 4/268 | 6.6 | 13.0% | noncoding (4542720/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4543016 | 32 (0.720) | noncoding (4543016/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 4549895 | NA (NA) | 5 (0.110) | 4/276 | 6.7 | 8.3% | noncoding (4549895/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4549908 | 55 (1.200) | noncoding (4549908/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3966835 = | 39 (0.820) | 4 (0.090) | 4/276 | 6.7 | 9.8% | noncoding (3966835/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3966855 = | 36 (0.780) | noncoding (3966855/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3701908 = | 36 (0.760) | 4 (0.090) | 4/272 | 6.7 | 10.6% | noncoding (3701908/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3701949 = | 33 (0.730) | noncoding (3701949/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3570872 = | 54 (1.130) | 4 (0.090) | 4/274 | 6.7 | 7.9% | noncoding (3570872/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3570898 = | 41 (0.900) | noncoding (3570898/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 3174967 | 58 (1.220) | 4 (0.090) | 4/276 | 6.7 | 6.9% | noncoding (3174967/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 3174976 | 52 (1.130) | noncoding (3174976/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3042440 = | 61 (1.280) | 4 (0.090) | 4/272 | 6.7 | 6.7% | noncoding (120/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_vch_tpiA | 3042472 = | 54 (1.190) | noncoding (152/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||