mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.9% | 88.7 / 45.6 | 70 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 68 (1.180) | 13 (0.260) | 13/246 | 3.7 | 21.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 35 (0.690) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4295974 = | 52 (0.900) | 11 (0.200) | 10/264 | 5.0 | 30.8% | noncoding (140/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4296294 = | 0 (0.000) | noncoding (460/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4295974 = | 52 (0.900) | 11 (0.200) | 10/264 | 5.0 | 28.4% | noncoding (140/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4296181 = | 6 (0.110) | noncoding (347/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4295948 = | 49 (0.850) | 11 (0.200) | 10/264 | 5.0 | 18.7% | noncoding (114/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295981 = | 49 (0.900) | noncoding (147/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4040683 | 58 (1.010) | 16 (0.280) | 9/274 | 5.6 | 20.2% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 69 (1.220) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 2729955 = | NA (NA) | 9 (0.160) | 8/266 | 5.8 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 224973 | 13 (0.230) | 9 (0.160) | 8/266 | 5.8 | 42.0% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 2690411 | 62 (1.080) | 8 (0.150) | 7/262 | 6.1 | 12.0% | coding (688/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
| ? | NC_000913 | = 2690416 | 59 (1.090) | coding (683/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR | |||||
| * | ? | NC_000913 | 1484624 = | 62 (1.080) | 7 (0.130) | 7/270 | 6.3 | 10.5% | coding (1564/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913 | 1484660 = | 59 (1.060) | coding (1600/3903 nt) | hrpA | putative ATP‑dependent helicase | |||||
| * | ? | NC_000913 | = 3946824 | 11 (0.190) | 8 (0.140) | 7/274 | 6.4 | 18.9% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040681 | 58 (1.020) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||