mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_vch_pgi | 526,796 | 0 | C | G | 37.8% | 41.4 / 49.5 | 45 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_vch_pgi | 526,800 | 0 | A | G | 37.2% | 40.4 / 35.6 | 44 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_vch_pgi | 526,792 | 0 | A | C | 34.1% | 32.2 / 38.5 | 45 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_vch_pgi | 4,296,063 | 0 | C | T | 22.2% | 47.7 / 12.2 | 36 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 3426803 | NA (NA) | 5 (0.320) +41 bp |
3/208 | 2.2 | 17.0% | intergenic (‑20/+155) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913_3_vch_pgi | 4168562 = | 34 (1.550) | intergenic (+115/‑79) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913_3_vch_pgi | = 4171803 | 22 (1.000) | 4 (0.190) +TTGATGT |
4/276 | 2.5 | 16.7% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_vch_pgi | = 4213155 | 20 (0.910) | noncoding (116/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913_3_vch_pgi | 306122 = | 22 (1.000) | 3 (0.150) | 3/266 | 2.8 | 13.6% | coding (696/1644 nt) | ecpD | polymerized tip adhesin of ECP fibers |
| ? | NC_000913_3_vch_pgi | 306162 = | 18 (0.890) | coding (656/1644 nt) | ecpD | polymerized tip adhesin of ECP fibers | |||||
| * | ? | NC_000913_3_vch_pgi | 3423376 = | 25 (1.140) | 3 (0.140) +TTGATGT |
3/276 | 2.9 | 11.2% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_vch_pgi | 3423672 = | NA (NA) | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_vch_pgi | = 1075237 | 23 (1.050) | 3 (0.140) | 3/284 | 3.0 | 13.2% | coding (3646/3963 nt) | putA | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| ? | NC_000913_3_vch_pgi | = 1075270 | 17 (0.790) | coding (3613/3963 nt) | putA | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||