BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1097294	42 (0.230)	61 (0.550) +GACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTC	20/170	10.6	45.1%	intergenic (+465/+271)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_pae_pgi	= 1097583	200 (1.100)		20/170	10.6	45.1%	noncoding (70/88 nt)	serX	tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 275 total aligned reads displayed.

GCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1097170‑1097294

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTG  <  NC_000913_3_pae_pgi/1097583‑1097436

                                                                                                                             |||||||||||||||||||||||||||||||||||||||||||||||||||||

GCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTACAGACCGTGAACGCAGTGAGCGG                                                                                                                                                                                  <  1:814044/150‑1

             TACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCA                                                                                                                                                                                          <  4:523323/129‑1

                                                                                        TGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTT                                                                                          >  2:1286708/1‑150

                                                                                        TGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCGGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCGCACCGCCAGAGCTCAAGAAGAGCTCGTACGAAACTACGGGCTTTTTCTT                                                                                          >  4:867980/1‑150

                                                                                                     TGTCCAACTGGCTGTCGCCAGTTGTACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCG                                                                                                                                                          <  1:1354796/73‑1

                                                                                                       TCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGGAGGGCGAGCGAAGCGAG                                                                                                                                                        >  3:1014594/1‑73

                                                                                                       TCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACA                                                                           >  4:297048/1‑150

                                                                                                       TCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACA                                                                           >  2:1239679/1‑150

                                                                                                       TCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTG                                                                                 <  3:230735/144‑1

                                                                                                       TCCAACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTG                                                                                 >  4:230735/1‑144

                                                                                                          AACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCA                                                                               <  4:1092138/143‑1

                                                                                                          AACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAA                                                                                                                        >  4:609041/1‑102

                                                                                                          AACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCC                                                                                                                                               <  4:912703/79‑1

                                                                                                          AACTGGCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCC                                                                                                                                               >  3:912703/1‑79

                                                                                                               GCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGG                                                                   <  2:1445838/150‑1

                                                                                                               GCTGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAA                                                                                                                            >  4:1022900/1‑93

                                                                                                                 TGTCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGGGGGAT                                                                 <  1:21353/150‑1

                                                                                                                   TCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGA                                                               >  1:508999/1‑150

                                                                                                                      CCAGTTGGACAGACCGTGAACGCAGTGAGCGGGTTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGG                                                                     >  1:102683/1‑141

                                                                                                                      CCAGTTGGACAGACCGTGAACGCAGTGAGCGGGTTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGG                                                                     <  2:102683/141‑1

                                                                                                                      CCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGA                                                               <  4:688941/147‑1

                                                                                                                      CCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGT                                                                                                                >  3:797477/1‑98

                                                                                                                      CCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTA                                                                                                                             >  3:178465/1‑85

                                                                                                                      CCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTAACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTT                                                                                           <  4:55537/119‑1

                                                                                                                        AGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCC                                                                                                                                                <  4:468545/64‑1

                                                                                                                         GTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTAC                                                                                                              >  1:886740/1‑97

                                                                                                                           TGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAA                                                                                                                        <  3:607284/85‑1

                                                                                                                            GGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGC                                                                                                                                                           >  2:432530/1‑49

                                                                                                                             GACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGG                                                                                                   <  3:577798/104‑1

                                                                                                                               CAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCA                                                                               <  2:479017/122‑1

                                                                                                                               CAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCA                                                                               >  1:479017/1‑122

                                                                                                                                AGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAA                                                                                                                           >  3:812149/1‑77

                                                                                                                                AGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAA                                                                                                                           <  4:812149/77‑1

                                                                                                                                AGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCC                                                                                                                                             >  3:1080316/1‑59

                                                                                                                                AGACCGTGAACGCAGTAAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT                                                                                                                                                       <  2:1949977/49‑1

                                                                                                                                 GACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCC                                                                                                                                                <  1:1538278/55‑1

                                                                                                                                  ACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGG                                                >  3:752844/1‑150

                                                                                                                                  ACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGC                                                                                                                                                           >  1:714490/1‑43

                                                                                                                                  ACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGC                                                                                                                                                           <  2:714490/43‑1

                                                                                                                                   CCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAATTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCC                                                        <  2:1149179/141‑1

                                                                                                                                   CCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCC                                                        >  1:1149179/1‑141

                                                                                                                                    CGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGg                                              >  1:1642872/1‑149

                                                                                                                                    CGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         <  1:306695/107‑1

                                                                                                                                    CGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         >  2:306695/1‑107

                                                                                                                                    CGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGT                                                                                                                <  3:882831/84‑1

                                                                                                                                    CGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG                                                                                                                                                        >  3:438648/1‑44

                                                                                                                                     GTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCG                                                                                                                                      <  2:332363/61‑1

                                                                                                                                     GTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCG                                                                                                                                      >  1:332363/1‑61

                                                                                                                                     GTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGA                                                                                                                                                         <  1:1857344/42‑1

                                                                                                                                      TGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         >  3:1105195/1‑105

                                                                                                                                      TGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         <  1:424104/105‑1

                                                                                                                                      TGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAA                                                                                                                        <  2:529074/74‑1

                                                                                                                                      TGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAA                                                                                                                        >  1:529074/1‑74

                                                                                                                                       GAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCC                                                                                                                                             <  1:1764805/52‑1

                                                                                                                                          CGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACA                                        >  1:169640/1‑150

                                                                                                                                           GCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         <  1:1049614/100‑1

                                                                                                                                           GCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         >  2:1049614/1‑100

                                                                                                                                           GCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCC                                                                                                                                               <  2:891490/46‑1

                                                                                                                                             AGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCAT                                                                                                                                  >  2:1669839/1‑57

                                                                                                                                             AGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCC                                                                                                                                             <  3:553423/46‑1

                                                                                                                                                 AGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAA                                                                                                                        >  2:3666/1‑63

                                                                                                                                                  GCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         <  1:1229360/93‑1

                                                                                                                                                   CGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATAT                                                                                   >  4:726662/1‑98

                                                                                                                                                   CGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAA                                                                                                                            >  3:479792/1‑57

                                                                                                                                                   CGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAA                                                                                                                            >  1:1805386/1‑57

                                                                                                                                                   CGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAA                                                                                                                            <  2:1805386/57‑1

                                                                                                                                                    GGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAA                                                                                                                           >  2:415215/1‑57

                                                                                                                                                    GGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCC                                                                                                                                               <  3:322521/37‑1

                                                                                                                                                      GCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCT                                                                                                 <  4:799828/81‑1

                                                                                                                                                       CTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCC                           <  1:400427/150‑1

                                                                                                                                                        TGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGG                                   <  1:1432494/141‑1

                                                                                                                                                        TGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGG                                   >  2:1432494/1‑141

                                                                                                                                                           CCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT                       >  4:437167/1‑150

                                                                                                                                                           CCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT                       <  2:1011651/150‑1

                                                                                                                                                           CCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC                                                         >  4:64278/1‑116

                                                                                                                                                           CCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC                                                         <  3:64278/116‑1

                                                                                                                                                           CCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGAT                                                                 >  2:975271/1‑108

                                                                                                                                                           CCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTACACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT                       >  2:1208145/1‑150

                                                                                                                                                            CGCAGGGCGAGCGAAGCGAGTCAATCCCCCTCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTG                      <  1:1274028/150‑1

                                                                                                                                                            CGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTG                      <  3:437167/150‑1

                                                                                                                                                             GCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGG                     >  3:994296/1‑150

                                                                                                                                                             GCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCAGATTTAAGGAAGGGCTAGTAGGAAAGTACGGGCTTTTTTTTTGTATATTGCACACATCGGGGGGATGAGAAGACCCGACCGGGGGTCGACAACTGGCGACAGCCAGTTGG                     >  4:647024/1‑150

                                                                                                                                                              CAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGA                    <  2:1540164/150‑1

                                                                                                                                                              CAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTAC                                                                                                              >  1:1472124/1‑60

                                                                                                                                                               AGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGG                                                 <  2:149204/120‑1

                                                                                                                                                               AGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGG                                                 >  1:149204/1‑120

                                                                                                                                                                    GAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAA                                                                                                                           >  4:273888/1‑41

                                                                                                                                                                    GAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAA                                                                                                                           >  4:1234576/1‑41

                                                                                                                                                                    GAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAA                                                                                                                           <  3:273888/41‑1

                                                                                                                                                                    GAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTT                                                                                                                              <  4:1079640/38‑1

                                                                                                                                                                      GCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGT            >  4:323201/1‑150

                                                                                                                                                                      GCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         >  1:590645/1‑73

                                                                                                                                                                      GCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         <  2:590645/73‑1

                                                                                                                                                                       CGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                         >  3:1060069/1‑72

                                                                                                                                                                         AAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGT                                                                                       <  3:718871/72‑1

                                                                                                                                                                             GAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTT                                                                                              <  1:949481/61‑1

                                                                                                                                                                              AGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATACTGCACCCACCGGGGGGATGAGAGGCCCCGACCCGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAG    <  2:1747164/150‑1

                                                                                                                                                                                TCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTG  >  2:1186183/1‑150

                                                                                                                                                                                TCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGT   <  2:822434/149‑1

                                                                                                                                                                                TCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGA                                          <  3:66895/110‑1

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GCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1097170‑1097294

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTG  <  NC_000913_3_pae_pgi/1097583‑1097436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.