| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4192177 | 6 (0.370) | 4 (0.260) | 4/242 | 1.6 | 35.1% | coding (459/771 nt) | thiG | thiamine biosynthesis ThiGH complex subunit |
| ? | NC_000913_3_pae_pgi | = 4192203 | 9 (0.580) | coding (433/771 nt) | thiG | thiamine biosynthesis ThiGH complex subunit | |||||
GCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/4192087‑4192177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcTGTGCAGCGGTGATGCCGCTCGGCGCGCCGATTGGCTCGAATCAGGGACTGGAAACCCGCGCCATGCTGGAGATTATTATCCAGCAGGCCACAGTGCCGGTGGTTGTCGATGCTGGCATCGGCGTTCCCAGCCATGCCGCGCAGGCGCT < NC_000913_3_pae_pgi/4192203‑4192055 GCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCTGTGCAGCGGTGATGCCGCTCGGCGCGCCGATTGGCTC < 1:169889/129‑1GCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCTGTGCAGCGGTGATGCCGCTCGGCGCGCCGATTGGCTC > 2:169889/1‑129 GACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCTGTGCAGCGGTGATGCCGCTCGGCGCGCCG < 3:60315/112‑1 GACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCTGTGCAGCGGTGATGCCGCTCGGCGCGCCG > 4:60315/1‑112 CTGTGCAGCGGTGATGCCGCTCGGCGCGCCGATTGGCTCGAATCAGGGACTGGAAACCCGCGCCATGCTGGAGATTATTATCCAGCAGGCCACAGTGCCGGTGGTTGTCGATGCTGGCATCGGCGTTCCCAGCCATGCCGCGCAGGCGCT < 1:83849/150‑1 GCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/4192087‑4192177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcTGTGCAGCGGTGATGCCGCTCGGCGCGCCGATTGGCTCGAATCAGGGACTGGAAACCCGCGCCATGCTGGAGATTATTATCCAGCAGGCCACAGTGCCGGTGGTTGTCGATGCTGGCATCGGCGTTCCCAGCCATGCCGCGCAGGCGCT < NC_000913_3_pae_pgi/4192203‑4192055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |