| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 3749440 = | 9 (0.560) | 3 (0.190) | 3/248 | 1.9 | 23.2% | coding (209/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase |
| ? | NC_000913_3_pae_pgi | 3749468 = | 11 (0.690) | coding (237/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase | |||||
GCCTCGTCACGGCTACCAAAGGGAAAGCGACGATGTGCGGACAGGCACATCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/3749494‑3749440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCA > NC_000913_3_pae_pgi/3749468‑3749562 GCCTCGTCACGGCTACCAAAGGGAAAGCGACGATGTGCGGACAGGCACATCGACGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCA > 2:198187/1‑150 CAAAGGGAAAGCGACGATGTGCGGACAGGCACATCGACGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAA < 1:32641/76‑1 CAAAGGGAAAGCGACGATGTGCGGACAGGCACATCGACGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAA > 2:32641/1‑76 GCCTCGTCACGGCTACCAAAGGGAAAGCGACGATGTGCGGACAGGCACATCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/3749494‑3749440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCA > NC_000913_3_pae_pgi/3749468‑3749562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |