New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1552249 =	NA (NA)	39 (0.250)	29/228	9.5	NA	noncoding (1/97 nt)	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_pae_pgi	1552279 =	NA (NA)					noncoding (31/97 nt)	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

GCAATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCatga‑‑a‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/1552404‑1552249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGAC  >  NC_000913_3_pae_pgi/1552279‑1552428                                                                                                                                                                                                                                                                                                                      GCAATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCA                                                                                                                                                                >  2:879259/1‑150  CAATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCAT                                                                                                                                                               >  2:1813404/1‑150   AATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATC                                                                                                                                                              >  1:926307/1‑150    ATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCC                                                                                                                                                             >  2:564904/1‑150    ATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCC                                                                                                                                                             <  1:1281827/150‑1    ATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCC                                                                                                                                                             <  3:559355/150‑1       AAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                          >  4:1191287/1‑150         AAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        <  1:1086020/150‑1            ATGGCACTTTATAAAGCGCCATTTAAAACTAATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACCTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑A                                                                                                                                                   <  1:978708/150‑1                 ACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCC                                                                                                                                              <  3:319544/150‑1                            CGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                          <  4:942610/129‑1                            CGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                          >  3:942610/1‑129                              CCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        <  3:421642/129‑1                              CCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        >  4:421642/1‑129                                         TGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                          >  2:1343501/1‑116                                         TGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                          <  1:1343501/116‑1                                             GACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        <  4:1282406/114‑1                                             GACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        >  3:1282406/1‑114                                                             CCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        <  2:736724/98‑1                                                             CCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        >  1:736724/1‑98                                                                          GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGG                                                                                      <  1:717897/149‑1                                                                          GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGG                                                                                      >  2:717897/1‑149                                                                          GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCC                                                                                                                                                             <  1:1931715/80‑1                                                                          GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCC                                                                                                                                                             >  2:1931715/1‑80                                                                             TATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                                                                         >  4:407378/1‑81                                                                             TATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                                                                         <  3:407378/81‑1                                                                                     CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA                                                                                                                                                      <  3:482641/76‑1                                                                                     CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA                                                                                                                                                      >  4:482641/1‑76                                                                                     CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTCTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTT                                                                          >  2:115341/1‑150                                                                                                 TGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑GAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTC                                                              >  4:482103/1‑150                                                                                                 TGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC                                                                                     <  1:407067/127‑1                                                                                                 TGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC                                                                                     >  2:407067/1‑127                                                                                                 TGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        >  1:2042029/1‑62                                                                                                 TGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                        <  2:2042029/62‑1                                                                                                             GATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCATGCCGCATCCGGCATGAACAAAGCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGC                                                    >  2:600685/1‑150                                                                                                               TTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTA                                                >  4:447631/1‑150                                                                                                                   AAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAA                                            >  3:1222293/1‑150                                                                                                                     GGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGT                                          >  1:1101520/1‑150                                                                                                                        TTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                                                                         >  4:1214624/1‑38                                                                                                                        TTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                                                                         <  3:1214624/38‑1                                                                                                                         TTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCA                                                                  <  4:244632/122‑1                                                                                                                         TTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCA                                                                  >  3:244632/1‑122                                                                                                                            CATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAACCCTTCAAATCCAATAGATTGCAGTGAAC                                                                                                                    <  4:675982/71‑1                                                                                                                            CATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAACCCTTCAAATCCAATAGATTGCAGTGAAC                                                                                                                    >  3:675982/1‑71                                                                                                                             ATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTT                                  >  2:54264/1‑150                                                                                                                             ATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAT                                                                                          >  2:372349/1‑94                                                                                                                             ATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAT                                                                                          <  1:372349/94‑1                                                                                                                             ATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGA                                                                                                        >  4:49119/1‑80                                                                                                                             ATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGA                                                                                                        <  3:49119/80‑1                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                 <  2:1101520/150‑1                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                 >  1:1118962/1‑150                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTT                                                 >  3:853405/1‑134                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTT                                                 <  4:853405/134‑1                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTT                                                                               <  1:1918534/104‑1                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTT                                                                               >  2:1918534/1‑104                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAA                                                                                                                     >  3:800375/1‑66                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAA                                                                                                                     <  4:800375/66‑1                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCA                                                                                                                          <  2:784581/61‑1                                                                                                                              TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCA                                                                                                                          >  1:784581/1‑61                                                                                                                              TGCCGGATAAGGCGTTAACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                 >  2:1084550/1‑150                                                                                                                                CCGGATAAGGCGTTCATGCCGCATCCGGCATGAACAAAGCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                 <  1:600685/150‑1                                                                                                                                 CGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTGCTAAATGGCGCTGTATAAAGTGCCATTTTTT                                >  4:68093/1‑150                                                                                                                                   GATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATT                            <  3:447631/150‑1                                                                                                                                   GATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATT                            >  1:236489/1‑150                                                                                                                                   GATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAA                                                                                                                                   >  2:347445/1‑47                                                                                                                                   GATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAA                                                                                                                                   <  1:347445/47‑1                                                                                                                                         GCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAA                      >  2:1599989/1‑150                                                                                                                                         GCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAA                      <  4:1222293/150‑1                                                                                                                                                      ATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAA         >  1:5115/1‑150                                                                                                                                                      ATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTT                                                                         >  4:121836/1‑86                                                                                                                                                      ATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTT                                                                         <  3:121836/86‑1                                                                                                                                                        CCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATC       <  3:940099/150‑1                                                                                                                                                         CGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCG      >  2:1585145/1‑150                                                                                                                                                         CGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAAC                     >  4:880603/1‑135                                                                                                                                                         CGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAAC                     <  3:880603/135‑1                                                                                                                                                         CGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                 >  1:1146735/1‑123                                                                                                                                                         CGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGACAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                 <  2:1146735/123‑1                                                                                                                                                          GGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGC     >  4:1005886/1‑150                                                                                                                                                           GCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCG    <  3:936132/150‑1                                                                                                                                                           GCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCG    >  1:228735/1‑150                                                                                                                                                           GCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGC                          >  1:1635758/1‑128                                                                                                                                                           GCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGC                          <  2:1635758/128‑1                                                                                                                                                             ATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGAC  >  4:20453/1‑150                                                                                                                                                                A‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACC                    >  1:1282977/1‑129                                                                                                                                                                A‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACC                    <  2:1282977/129‑1                                                                                                                                                                A‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTT                                                                          >  3:851047/1‑75                                                                                                                                                                A‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTT                                                                          <  4:851047/75‑1                                                                                                                                                                   AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCACTTTATAAAGCGCCAT                                     <  4:281111/111‑1                                                                                                                                                                   AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCACTTTATAAAGCGCCAT                                     >  3:281111/1‑111                                                                                                                                                                                                                                                                                                                      GCAATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCatga‑‑a‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/1552404‑1552249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGAC  >  NC_000913_3_pae_pgi/1552279‑1552428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.