New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	4244358 =	NA (NA)	17 (0.450)	10/258	2.7	NA	noncoding (7/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_pae_pgi	4244384 =	NA (NA)					noncoding (33/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences

ACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/4244514‑4244358 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCG  >  NC_000913_3_pae_pgi/4244384‑4244531                                                                                                                                                                                                                                                                                                                   ACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGC                                                                                                                                                              <  1:404611/149‑1  cggGCAGACTCGCATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  2:426506/146‑1  CGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGGGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCa                                                                                                                                                             <  2:313067/149‑2  CGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGACAGCC                                                                                                                                                             <  1:367606/149‑1  CGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  2:589805/149‑1  CGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  2:285282/149‑1  CGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  1:98320/149‑1  CGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  1:597825/149‑1  CGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  1:381489/149‑1  CGCGCAGACCCGGATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  2:205064/149‑1   GCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCT                                                                                                                                                            >  2:197788/1‑149   GCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCT                                                                                                                                                            >  1:74562/1‑149    cgtAGACTCGTATAACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTT                                                                                                                                                           <  2:466153/146‑1    CGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTT                                                                                                                                                           <  2:96401/149‑1    CGCAGACTCGTATCACCAAGTAATGCTGTGAAACGCCGGATGCGGCGTGACCGCCTTGCCCTGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTT                                                                                                                                                           <  1:6271/149‑1     GCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTA                                                                                                                                                          >  1:405367/1‑149     GCAGACTCGTATCACCAAGTAATGCGGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTA                                                                                                                                                          <  1:85409/149‑1     GCAGACTCGTATCACCAAGTAATGCAGTAAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGCAAGCCTTA                                                                                                                                                          >  2:249201/1‑149      CAGATTCGTATCACCAAGTAATGCTGTGAAAGGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTAT                                                                                                                                                         <  2:429387/149‑1      CAGACCCGTATCACCAAGCAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTAT                                                                                                                                                         <  1:559545/149‑1       AGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATC                                                                                                                                                        >  2:623954/1‑149       AGACTCGCAGCACCAAGTAATGCTGTGAAATGGCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATC                                                                                                                                                        <  2:234056/149‑1        GACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCC                                                                                                                                                       <  1:91110/149‑1        GACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCCAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCC                                                                                                                                                       <  1:663663/149‑1              TATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAGAACCGAAACGGATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTAGGATAAGGCGGGAAAGCCTTGTCCGcgctg                                                                                                                                                 >  2:337955/1‑144                                       CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTAT                                                                                                                                                         <  2:38210/116‑1                                       CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTAT                                                                                                                                                         >  1:38210/1‑116                                                GCGTGAACGCCTTGTCCGGCCTACAAAACCGGAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGC                                                                                                                                                              >  2:520079/1‑102                                                GCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGC                                                                                                                                                              <  1:520079/102‑1                                                                          AACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             <  1:71011/77‑1                                                                          AACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCC                                                                                                                                                             >  2:71011/1‑77                                                                                                                   CATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCAGACAACAACTGCCTGATGCGACGTTGACGCGTCTTATCAGGCCTACATACGTTTCAGTTTTGTAGGCCGGACAAGCCGTTCACGCCGCATCCGGCATTTCCAAGCAT                                            >  2:683572/1‑149                                                                                                                                  GTCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGA                             >  2:585246/1‑149                                                                                                                                  GTCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCA                                                  >  1:413545/1‑128                                                                                                                                  GTCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCA                                                  <  2:413545/128‑1                                                                                                                                   TCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAG                            >  2:216994/1‑149                                                                                                                                   TCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACA                                                <  2:621396/129‑1                                                                                                                                   TCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACA                                                >  1:621396/1‑129                                                                                                                                     GGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTC                          >  2:109263/1‑149                                                                                                                                     GGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTC                          >  2:82484/1‑149                                                                                                                                     GGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCA                                                                                                                >  1:607428/1‑63                                                                                                                                     GGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCA                                                                                                                <  2:607428/63‑1                                                                                                                                      GATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATGAATCCTACATACGTTTCGTCTTTGTAGGCCGGACAAGGCATTCCCGCCGCGTCCGGCATTTCACAGCATTACTTGGGGATACGAGTCT                         >  1:172834/1‑149                                                                                                                                      GATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCT                         >  1:380343/1‑149                                                                                                                                      GATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGT                                    >  2:55641/1‑138                                                                                                                                      GATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGT                                    <  1:55641/138‑1                                                                                                                                      GATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGACTAATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCAAAGCGTTACTTGGCGACACGACTCT                         >  2:121314/1‑149                                                                                                                                        TAAGGCGTGAAAGCCTTATCCGTCAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGC                       >  2:226080/1‑149                                                                                                                                                    gtctcacCCGACAACAACTGCCTGATGCGCCGCTGACGCGTCTTATCAGGCCTACATCCGTTTCGGTTCTGTAGGCCGGACAAGGCGTTCACGCCGTATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGG           <  1:112182/142‑1                                                                                                                                                    GCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTGGGAGGAAGGAGGCGTTCCCGCCTCATCCGGCATTTCACAGCACTACTTGGTGATACGCGTCTGCGCGTCTTTCAag           >  2:443967/1‑147                                                                                                                                                    GCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATGACTTGGTGATACGAGTCTGCGCGTCTTTCCGG           >  1:2189/1‑149                                                                                                                                                    GCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAG                                                                                                               >  2:78294/1‑49                                                                                                                                                    GCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAG                                                                                                               <  1:78294/49‑1                                                                                                                                                     CCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGG          <  1:558441/149‑1                                                                                                                                                     CCTTACCCGACAACAACTGCCTGATGCGACGCGGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGG          <  2:172834/149‑1                                                                                                                                                      tTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCTACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTATTTGGTGATTCGAGTCTGCGCGTCTTTCAGGGC         <  1:571496/148‑1                                                                                                                                                      CTTATCCGACAACGGCTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTTTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGATTCTGCGCGTCTTTCAGGGC         <  2:166527/149‑1                                                                                                                                                      CTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCTGCATTTCACAGCATTACTTGGTTATACGAGTCTGCGCGTCTTTCAGGGC         >  1:39185/1‑149                                                                                                                                                      CTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGC         >  2:643039/1‑149                                                                                                                                                      CTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGC         <  2:230874/149‑1                                                                                                                                                      CTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATAC                               >  2:621620/1‑127                                                                                                                                                      CTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATAC                               <  1:621620/127‑1                                                                                                                                                       TTATCCGACAACAACTGCCTGATGCGACGCTGACGCATCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGTACAAGGCGTTCACGCCGCATCCGACATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCT        >  2:344892/1‑149                                                                                                                                                        TATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTa       <  2:81281/149‑2                                                                                                                                                        TATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTT       <  2:340253/149‑1                                                                                                                                                        TATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTT       <  1:463671/149‑1                                                                                                                                                         ATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTC      <  2:625843/149‑1                                                                                                                                                         ATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTC      >  2:60322/1‑149                                                                                                                                                         ATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTC      >  1:422909/1‑149                                                                                                                                                         ATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACA                                                >  1:287990/1‑107                                                                                                                                                         ATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACA                                                <  2:287990/107‑1                                                                                                                                                         ATCCGAAAACGACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCGTTGGTTGTTGTTATGAGTCTGCGCGTCTTTCAGGGCTTC      <  2:342393/149‑1                                                                                                                                                          gCCGACAACAACCGCCGCAGTCGACGCTGACGCGTCTGCTCAGGCCTACATACGTTTCCGTTTTGTAGGCCGGACAAGGCGTTCAGGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCA     <  2:4999/148‑1                                                                                                                                                          TCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGCGTCTGCGCGTCTTTCCGGGCTTCA     >  1:420442/1‑149                                                                                                                                                           CCGCCAACAACTTCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTCCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT    <  1:549595/149‑1                                                                                                                                                           CCGAGAACATCTGCCTGGTGCGACGCCGACGCGTGTTATCAGGCCTACATACTTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCTGCATCCGGCATTTCACAGCATTACTTGGTGATACAAGTCTGCGCGTCTTTCAGGGCTTCAT    <  2:625156/149‑1                                                                                                                                                           CCGACCACAACTGCCTGATGGGGTATCGAGTCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT    <  2:367606/149‑1                                                                                                                                                           CCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCCGGGCTctga    <  2:91110/149‑5                                                                                                                                                           CCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT    <  2:50547/149‑1                                                                                                                                                           CCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT    <  2:163551/149‑1                                                                                                                                                           CCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTCGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGTTGATACGAGTCTGCGCGTCTTTCACGGCTTCAT    >  2:553221/1‑149                                                                                                                                                           CCGACAACAACTGCCTGATGCGACGCGTACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT    <  2:34864/149‑1                                                                                                                                                            CGACAACACCTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATC   <  1:81296/149‑1                                                                                                                                                            CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATC   >  2:379077/1‑149                                                                                                                                                            CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATC   <  2:478226/149‑1                                                                                                                                                            CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATC   >  2:15578/1‑149                                                                                                                                                            CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCA                                                                     <  1:62815/83‑1                                                                                                                                                            CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCA                                                                     >  2:62815/1‑83                                                                                                                                                            CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGCGGGAAAGTCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATC   <  1:530978/149‑1                                                                                                                                                            CGACAACAACTGCCTGATGCGACGCTGACGAATGCCCGGAATCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATC   >  1:359532/1‑149                                                                                                                                                            CGACAACAACTGCCTGATGCGAAGCTGACGCGTATTATCAGGTCTACATACGTTTCGGTTTTGTAGGAAGGACAGGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATC   <  1:199896/149‑1                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCCTTTCACAGCATGACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCG  >  1:350960/1‑149                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCTGGGCTTCATCG  >  2:248020/1‑149                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCa  >  2:464111/1‑148                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCG  >  1:217574/1‑149                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCG  >  1:402181/1‑149                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT    <  2:126978/147‑1                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT    >  1:126978/1‑147                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGG                                     <  2:14448/114‑1                                                                                                                                                             GACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGG                                     >  1:14448/1‑114                                                                                                                                                                                                                                                                                                                   ACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/4244514‑4244358 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCG  >  NC_000913_3_pae_pgi/4244384‑4244531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.