| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 4536890 = | 156 (0.930) | 18 (0.120) | 18/242 | 16.0 | 10.9% | intergenic (‑36/+29) | nanS/nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| ? | NC_000913_3_pae_pgi | 4536914 = | 149 (0.950) | intergenic (‑60/+5) | nanS/nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCCTACGGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4537048‑4536890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccctgAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATA > NC_000913_3_pae_pgi/4536914‑4537061 GGCCTACGGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAG < 1:1722248/151‑1GGCCTACGGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAG < 1:1722112/151‑1GGCCTACGGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGCCCCCGGTAAAG > 2:1598956/1‑151 GCCTACGGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGG < 4:792190/151‑1 CGGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCC > 4:618682/1‑151 GGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCT < 1:128326/151‑1 GGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCT > 2:933591/1‑151 AATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCC > 4:983506/1‑128 AATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCC < 3:983506/128‑1 GGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCC > 1:1303989/1‑108 GGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCC < 2:1303989/108‑1 ACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGAAG < 2:1314317/107‑1 ACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGAAG > 1:1314317/1‑107 GGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGG < 1:1625565/91‑1 GGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGG > 2:1625565/1‑91 TTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGG < 1:1685988/65‑1 TTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGG > 2:1685988/1‑65 GAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGCAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAG < 2:480135/139‑1 GAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGCAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAG > 1:480135/1‑139 AAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCA < 2:1459024/110‑1 AAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCA > 1:1459024/1‑110 CAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCGCC > 1:1019113/1‑129 CAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACC < 2:1019113/129‑1 AACGCTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTATTGTGTCTTTATTATTCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAAT > 2:1609016/1‑151 GCTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCT < 1:106972/103‑1 GCTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCT > 2:106972/1‑103 CTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAA < 2:1200977/76‑1 CTTCAGGGCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAA > 1:1200977/1‑76 GCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCC > 2:1702794/1‑53 GCCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCC < 1:1702794/53‑1 CCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCA > 3:1002925/1‑109 CCCCGGTAAAGGGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCA < 4:1002925/109‑1 AAGGGGCCCTGCAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACC > 1:260155/1‑151 GGGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTG > 3:452895/1‑151 GGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGC < 4:1033213/151‑1 GGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGC < 1:1647971/151‑1 GGCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCGTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGC < 2:1090809/151‑1 GCCCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCG < 1:1982764/151‑1 CCTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGAT < 3:792190/151‑1 CTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATA > 1:240218/1‑151 CTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATA > 2:133696/1‑151 CTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGAT > 1:342702/1‑126 CTGAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGAT < 2:342702/126‑1 GGCCTACGGAGTATCATTGCCCTGGAATAATAGTCTATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCACTGTGAAGGATAATAAAGTCACAGTACAAAACTAACGCTTCAGGGCCCCGGTAAAGGGGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4537048‑4536890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccctgAAGCGTTAGTTTTGTACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTGCCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATA > NC_000913_3_pae_pgi/4536914‑4537061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |