mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 33.9% | 150.8 / 114.9 | 109 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 33.0% | 116.3 / 98.0 | 113 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 30.0% | 161.0 / 65.0 | 102 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 25.0% | 153.4 / 42.5 | 92 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 4541942 = | 45 (0.600) | 14 (0.200) | 13/264 | 6.0 | 21.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_pgi | 4542256 = | 62 (0.890) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_pgi | = 4541950 | 47 (0.630) | 12 (0.170) | 12/264 | 6.4 | 18.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_pgi | = 4542246 | 61 (0.880) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_pgi | 235200 = | 77 (1.040) | 6 (0.090) | 6/266 | 9.2 | 7.4% | coding (385/723 nt) | yafS | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| ? | NC_000913_3_pae_pgi | 235223 = | 77 (1.100) | coding (408/723 nt) | yafS | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase | |||||
| * | ? | NC_000913_3_pae_pgi | = 288413 | 96 (1.290) | 6 (0.090) | 5/264 | 9.7 | 6.1% | coding (750/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_pae_pgi | = 288439 | 96 (1.380) | coding (724/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_pae_pgi | = 2382550 | 77 (1.040) | 7 (0.100) | 5/266 | 9.8 | 9.1% | intergenic (+25/‑163) | rbn/elaD | RNase BN, tRNA processing enzyme/protease, capable of cleaving an AMC‑ubiquitin model substrate |
| ? | NC_000913_3_pae_pgi | = 2382557 | 67 (0.960) | intergenic (+32/‑156) | rbn/elaD | RNase BN, tRNA processing enzyme/protease, capable of cleaving an AMC‑ubiquitin model substrate | |||||
| * | ? | NC_000913_3_pae_pgi | = 1886825 | 73 (0.980) | 4 (0.060) | 4/260 | 10.2 | 5.9% | intergenic (+15/+39) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D |
| ? | NC_000913_3_pae_pgi | = 1886846 | 61 (0.890) | intergenic (+36/+18) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D | |||||
| * | ? | NC_000913_3_pae_pgi | 4611277 = | 64 (0.860) | 4 (0.060) | 4/266 | 10.4 | 5.9% | intergenic (+16/‑111) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein |
| ? | NC_000913_3_pae_pgi | 4611299 = | 67 (0.960) | intergenic (+38/‑89) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_pgi | 4522723 = | 99 (1.330) | 4 (0.060) | 4/264 | 10.4 | 4.0% | coding (632/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913_3_pae_pgi | 4522748 = | 101 (1.450) | coding (607/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913_3_pae_pgi | 2425439 = | 63 (0.850) | 4 (0.060) | 4/266 | 10.4 | 6.3% | coding (478/687 nt) | hisQ | histidine ABC transporter permease |
| ? | NC_000913_3_pae_pgi | 2425468 = | 59 (0.840) | coding (449/687 nt) | hisQ | histidine ABC transporter permease | |||||
| * | ? | NC_000913_3_pae_pgi | = 2261714 | 90 (1.210) | 4 (0.060) | 4/266 | 10.4 | 4.5% | coding (652/939 nt) | fruK | fructose‑1‑phosphate kinase |
| ? | NC_000913_3_pae_pgi | = 2261731 | 85 (1.210) | coding (635/939 nt) | fruK | fructose‑1‑phosphate kinase | |||||