New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1207805	9 (0.200)	34 (0.830)	30/254	0.4	80.0%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_pae_pgi	= 1209602	9 (0.220)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1207642‑1207805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT  <  NC_000913_3_pae_pgi/1209602‑1209455                                                                                                                                                                                                                                                                                                                          ttCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGTACGACCAGTTACTTACCGCACTTCGCGCGCTGTTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT                                                                                                                                                                     <  1:488857/147‑1  GCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                                                    <  1:801135/149‑1       GTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGACGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT                                                                                                                                                               <  2:698403/149‑1         GGTGGAGGCATCCGGGGCCAGGCTGGAGAGGGGGCGGGACGACCAGTTACTTACCGCACTTGGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG                                                                                                                                                             <  2:209773/149‑1              AGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                                                                                                        <  2:588754/149‑1                       GTGCCAGCCGGGAGAAGGGGCGGCACGACCAGTTACTTACCGGACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCA                                                                                                                                               <  2:291178/149‑1                               CTGGAGAAGGGGCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGTATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGT                                                                                                                                       <  1:167317/149‑1                                TGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTT                                                                                                                                      <  2:98573/149‑1                                 ggggagGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTG                                                                                                                                     <  2:199096/143‑1                                 GGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTG                                                                                                                                     <  1:597299/149‑1                                      AGGGGCGGCAGGACTAGTTACTTACTGCACTTGGCGCGCTGCTGTTAAGCCTCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTC                                                                                                                                <  2:115942/149‑1                                         gggGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGATGTTAAGCCGCAAGATTCCGTTTGGCGATATCAAATCGGATGGCATTGTGCAATCGGCTATCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCG                                                                                                                             <  1:546301/146‑1                                         GGCGGCACGACCAGTTACTTACCGGACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGTTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCG                                                                                                                             <  1:541780/149‑1                                               ACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCG                                                                                                                       <  2:595335/149‑1                                                              CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGACACAGTGCAAACGGCTCACGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACT                                                                                                        >  1:100672/1‑149                                                               CGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGGACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGCTCTGCATTACCTTTTGGTGTTCCGGTTCCGTGGCCTTCAGCCctca                                                                                                       >  2:307593/1‑145                                                                  ACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATAGGATTGCACTATGCAACCGGCTCTCGAAAACCTTGGTTTGGGATAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGC                                                                                                    >  1:302860/1‑149                                                                     TCGCGCGCTGCTGTAAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTTTCGAAAACCTTGGTTTGGGAGAATGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAA                                                                                                 <  1:342578/149‑1                                                                            cgGCTTTTAAGCCGCAAGAGTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTG                                                                                          <  2:717759/147‑1                                                                             TGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCAATGTGCAAACGGCACTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGG                                                                                         >  1:150055/1‑149                                                                                         GCAAGAATCCGTTTGGCGCTCTCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAct                                                                             >  1:8320/1‑147                                                                                         GCAAGAATCCGTTTGGCGATATCAAATCGGCTGGCACTGTGCAAACGGCTATCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAAT                                                                             >  1:8567/1‑149                                                                                            agtacgCGTTGGGCTAGAGCAAATCGGATGGCACTGTGCAAACGGGTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTTCACTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGT                                                                          <  2:138192/143‑1                                                                                                TCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTTGATTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCG                                                                      >  1:150544/1‑149                                                                                                    TTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTT                                                                  <  1:145121/149‑1                                                                                                          GATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGC                                                            >  1:764182/1‑149                                                                                                                 AATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCTATGGTGCC                                                                       >  2:779029/1‑131                                                                                                                 AATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCC                                                                       <  1:779029/131‑1                                                                                                                     ggcTGGCACTGTGCAAACGGTTTTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGTTGTCCCGGTTCCGTGGCCTTCAGCCTCTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACC                                                 <  1:579182/146‑1                                                                                                                       ATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCTCTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCG                                               <  2:786727/149‑1                                                                                                                          GCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTTGGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCTAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAA                                            <  2:302860/149‑1                                                                                                                          GCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTTGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAA                                            <  1:647032/149‑1                                                                                                                                     ACGGCTCTCTAAAACCGTGGGTTGGGAGAAGGCTCTGGATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGGTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGC                                 <  2:648481/149‑1                                                                                                                                     ACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGC                                 >  1:683743/1‑149                                                                                                                                       GGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCTGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCTGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTT                               <  1:338543/149‑1                                                                                                                                         CTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGCGCAAACTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTAT                             >  1:543639/1‑149                                                                                                                                            TCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGG                                        <  1:536996/135‑1                                                                                                                                            TCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGG                                        >  2:536996/1‑135                                                                                                                                              GAAAACCGTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGTTTCCGGGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGTAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGAC                        <  1:404205/149‑1                                                                                                                                                     TTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGCCATCCCTCTCCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAA                 >  1:186365/1‑149                                                                                                                                                         gTTGGGATAAGGGTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCGTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGC             <  2:8320/148‑1                                                                                                                                                         TTTGGGAGAAGGCTGTGCATTCCCTGTTGGTGTCCAGTTTCCGTGGCCTTCAGCCACCCCGCCAACACGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACTCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGC             <  2:8567/149‑1                                                                                                                                                          TTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCC            <  2:624249/149‑1                                                                                                                                                             GGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGA         >  2:581996/1‑149                                                                                                                                                             GGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGA         >  2:382593/1‑149                                                                                                                                                               gGAAGGTTGTGCCTTACCTGCTGGTGTCCCGGGTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGATGAAATGCAATGGTGAAGCTTTTTCTGCTGAAGAATAACTGGGTCTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATT       <  2:86181/148‑1                                                                                                                                                               AGAAGGATTTGCATTACCCGTTGGTGTCCCTGTTACGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATT       <  2:758314/149‑1                                                                                                                                                                    GCTCTGCATTACCTATTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAACGCTTATACAACAAATAAATTGCCTGATCTACat  >  2:408482/1‑147                                                                                                                                                                                                                                                                                                                          TGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1207642‑1207805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT  <  NC_000913_3_pae_pgi/1209602‑1209455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.