Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_pae_pgi3,781,1400AG22.1% 287.2 / 13.1 143intergenic (+123/‑75)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (77/32);  new base G (0/31);  total (79/64)
Fisher's exact test for biased strand distribution p-value = 8.08e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 153 total aligned reads displayed.

CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAA  >  NC_000913_3_pae_pgi/3781042‑3781238
                                                                                                  |                                                                                                  
ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag                                                                                                   <  1:4164881/100‑1 (MQ=255)
ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag                                                                                                   <  2:3072980/100‑1 (MQ=255)
ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag                                                                                                   <  2:3806607/100‑1 (MQ=255)
ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag                                                                                                   <  1:1768585/100‑1 (MQ=255)
 ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAgg                                                                                                  <  2:1813606/100‑1 (MQ=255)
   ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc                                                                                                >  1:4779609/1‑100 (MQ=255)
      ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAggga                                                                                                <  1:1116476/97‑2 (MQ=255)
      ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc                                                                                               <  2:1685384/98‑1 (MQ=255)
      ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCg                                                                                              <  1:1645324/99‑1 (MQ=255)
       cTCAGGGGGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg                                                                                            <  2:1935886/100‑1 (MQ=255)
       cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg                                                                                            >  2:3193844/1‑100 (MQ=255)
        tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg                                                                                            >  1:1660747/1‑99 (MQ=255)
          aGGGAGTGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACGCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg                                                                                           <  2:4983335/98‑1 (MQ=255)
          aGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt                                                                                          >  2:5107269/1‑99 (MQ=255)
            ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                                                                       <  1:1690581/100‑1 (MQ=255)
            ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                                                                       <  1:3230357/100‑1 (MQ=255)
            ggAGAGGGGACCGGTCGGCGCTGTATGTACGCCCTCGCGCTGAAACGACGCCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg                                                                                           <  2:2693505/96‑1 (MQ=38)
             gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                      <  2:552774/100‑1 (MQ=255)
               gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgggg                                                                                    <  1:1538593/100‑1 (MQ=255)
                 ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa                                                                                   >  1:3573248/1‑99 (MQ=255)
                   ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                  >  1:4344010/1‑98 (MQ=255)
                   ggACCGTTCGGCGCTGTATGTACTCCCTCACGCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                                                                <  2:4655090/100‑1 (MQ=255)
                    gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                               <  1:2748359/100‑1 (MQ=255)
                      ncGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                             >  2:3128076/2‑100 (MQ=255)
                       cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                             >  2:1118450/1‑99 (MQ=255)
                           cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCa                                                                         >  2:1707659/1‑99 (MQ=255)
                            ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc                                                                        >  1:3006985/1‑99 (MQ=255)
                            ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCACTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACt                                                                       >  1:480518/1‑100 (MQ=255)
                              cgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCACACTg                                                                      >  1:4203789/1‑99 (MQ=255)
                                 tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTCCCTTTCCTTTCCGGGGGGCGGGCCGGGGTGAGGGGAACAGGCCGCACTGCt                                                                    >  1:1995822/1‑98 (MQ=255)
                                  gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGCAAAGGCCGCACTGCTCAc                                                                 >  2:4275623/1‑100 (MQ=255)
                                   tatgttCTCCCTCACTCTGAAACGACACCGCGCTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg                                                                                         <  2:2556637/75‑1 (MQ=255)
                                     tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCaa                                                              >  2:1431292/1‑100 (MQ=255)
                                      gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCTGGGCGATCGCCTGGGTGCGGGGACAAGGCCGCACTGCTCACCAAt                                                             >  2:1273953/1‑100 (MQ=255)
                                         cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt                                                          >  1:397997/1‑100 (MQ=255)
                                           cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                        >  2:1116290/1‑100 (MQ=255)
                                           cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                        >  1:1948936/1‑100 (MQ=255)
                                            cccccctctGAACCGACCCCGCCCTCTTTTTTTCTCCCCCGCCCCCCCGGGGAGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                       <  1:3022833/95‑1 (MQ=255)
                                            cccccctctGAAACGCCACCGCACTCTTTTTTTCCCCCCCCCCCCCCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCACTTTTCTg                                                       <  2:5196991/95‑1 (MQ=255)
                                            cccccctcgGAACCGCCCCCGCACTCTTTTTTCCCCCCCCCCCCCTCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                       <  1:523011/95‑1 (MQ=255)
                                            ccccACTCTGAAACGACCCCGCACTCTTTTTTCCCCCCTCCCCCCTCCGGGGGGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAAtt                                                            <  1:915575/92‑1 (MQ=255)
                                            ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                       >  2:893037/1‑100 (MQ=255)
                                             cTCCCTCTGAAACGACCCCGCACTTTTTTTTTCCCCCTCGCCCCCCGGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                      <  1:201071/100‑1 (MQ=37)
                                             cTCACCCGGAACCGACACCGCACTCTTTTTTTCTCCCTCGCCCCCCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                      <  2:1184691/100‑1 (MQ=255)
                                              ccACTCGGAACCGACCCCGCACTCTTTTTTTCGCCCTCGCCCCCCGGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                     <  2:147372/99‑1 (MQ=255)
                                                aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCCCCAATTTTCTGCTAt                                                   >  2:446768/1‑100 (MQ=255)
                                                aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                   >  2:3350271/1‑100 (MQ=255)
                                                 ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGCGAGAGGGCCGGGGTGAGGGGAAAAGGCGGCACTCCTCACCAATTTTCTGCTATc                                                  >  2:1521255/1‑100 (MQ=255)
                                                    tGAACCGCCGCCGCACTCTTTTTTTCCCCCCCGCCCCCCCGGGGGGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                 <  2:310447/98‑1 (MQ=255)
                                                    tGAAACGACACCGCACTCTTTTTTTCTCCTTCTCCCCTCCGGGGACAGGGCCGGGTTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                               >  2:5064722/1‑100 (MQ=255)
                                                     gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                              >  2:4420369/1‑100 (MQ=255)
                                                     gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                              >  1:1535933/1‑100 (MQ=255)
                                                     gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                              >  2:859370/1‑100 (MQ=255)
                                                      aaaCGACACCGCACTCTTTTTTCCCCCCTCGCCCCCCCGGGGAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                               <  1:3581612/98‑1 (MQ=39)
                                                       aaCGACCCCGCACTCTTTTTTTCCCCCTCGCCCCTCCGGGGAGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                            <  1:3833632/100‑1 (MQ=38)
                                                       aaCGACACCGCACTCTTTTTTTCTTTTTTTTCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                            >  2:2266669/1‑100 (MQ=255)
                                                       aaCGACACCGCACTCTTTTTTTCTTTTTTGTTCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                            >  2:5192510/1‑100 (MQ=255)
                                                       aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                            >  2:3310184/1‑100 (MQ=255)
                                                       aaCGACACCGCACTCTTTTTTTCTCACTCGCCCCTCCGGGGACAGTGCCGGGGTGAGGGGAAAAGGCCGCATTTCTCACCAATTTTCTGCTATCCTGccc                                            >  2:1006536/1‑100 (MQ=255)
                                                        aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                           >  1:2176968/1‑100 (MQ=255)
                                                              ccGCCCTCTTTTTTTCCCCCTCGCCCCTCCGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                     <  1:3166711/100‑1 (MQ=38)
                                                              ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGTCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                      >  1:5109509/1‑99 (MQ=255)
                                                               cGCCCTCTTTTTTTCTCCCTCGCCCCTCGGGGGAGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc                                        <  1:4942548/96‑1 (MQ=255)
                                                               cGCACTCTTTTATTCTCCCTCGCCCCTCCGGGGAGTGGGCCGGGATGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTCCTATCCTGCCCCCGCACt                                     >  2:4391131/1‑99 (MQ=255)
                                                                   ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                >  2:2011090/1‑100 (MQ=255)
                                                                     ctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                              >  1:2435208/1‑100 (MQ=255)
                                                                     ctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                              >  2:3011752/1‑100 (MQ=255)
                                                                       ttttttCCCCCTCGCCCCTCCGGGGAGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCAcc                                                                <  1:1130576/64‑1 (MQ=25)
                                                                        tttttCTCCCGCGCCCCTCGGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                       <  2:433199/88‑1 (MQ=255)
                                                                        tttttCCCCCTCGCCCCCCCGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                <  2:1534865/95‑1 (MQ=38)
                                                                        tttttCCCCCCCGCCCCTCGGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                  <  1:1155656/93‑1 (MQ=38)
                                                                        tttttCCCCCCCGCCCCTCGGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                             <  1:163608/98‑1 (MQ=255)
                                                                         ttttCCCCCCCGCCCCTCCGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                           <  2:1818251/99‑1 (MQ=39)
                                                                          tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                         >  1:1299050/1‑100 (MQ=255)
                                                                           ttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                        >  2:5158947/1‑100 (MQ=255)
                                                                           ccggcccTCTCCCCGGAGGGGCGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                         >  1:4080097/5‑99 (MQ=38)
                                                                             ctcCCTCGCCCCTCGGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                       <  1:234725/99‑1 (MQ=255)
                                                                             ctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                      >  2:2210141/1‑100 (MQ=255)
                                                                               ccccCGCCCCTCGGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                    <  1:860947/100‑1 (MQ=255)
                                                                               ccccCGCCCCCCGGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                    <  1:860850/100‑1 (MQ=255)
                                                                               cccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                     >  1:4234840/1‑99 (MQ=255)
                                                                                ccTCGCCCCTCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                      <  1:985955/97‑1 (MQ=255)
                                                                                ccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                    >  1:4459077/1‑99 (MQ=255)
                                                                                    gCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt               >  1:4780236/1‑100 (MQ=255)
                                                                                     ccccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc              >  1:420026/1‑100 (MQ=255)
                                                                                      cccTGCGTGGGGGGGGCCGGGTTGAGGGGAAAAGGCCGc                                                                          <  2:3221338/39‑1 (MQ=255)
                                                                                       ccTCGGGGGGGGGGGCGGGGTGGGGGGGCAAAGCCCGAACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt            <  1:5181477/100‑1 (MQ=255)
                                                                                       ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg             >  2:2978942/1‑99 (MQ=255)
                                                                                       ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTAACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg             >  2:3120527/1‑99 (MQ=255)
                                                                                        cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa           >  1:1234666/1‑100 (MQ=255)
                                                                                          ccGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt         >  2:2421043/1‑100 (MQ=255)
                                                                                           cGGGGGGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt         <  1:2748364/99‑1 (MQ=255)
                                                                                            ggggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt        >  2:4785313/1‑99 (MQ=255)
                                                                                             ggggGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                      <  2:3744218/84‑1 (MQ=255)
                                                                                             gggAGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa      <  1:129403/100‑1 (MQ=255)
                                                                                             gggAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                  <  2:4767780/72‑1 (MQ=255)
                                                                                              ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc     >  1:2803577/1‑100 (MQ=255)
                                                                                              ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc     >  1:2803619/1‑100 (MQ=255)
                                                                                                 gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa  >  2:4664826/1‑100 (MQ=255)
                                                                                                 gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa  >  1:37145/1‑100 (MQ=255)
                                                                                                  |                                                                                                  
CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAA  >  NC_000913_3_pae_pgi/3781042‑3781238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑