mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 24.6% | 200.9 / 70.7 | 119 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 219 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | 2726200 = | NA (NA) | 25 (0.320) | 19/266 | 5.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_KO_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 228744 | 64 (0.780) | 25 (0.320) | 19/266 | 5.0 | 29.0% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | 3423376 = | 96 (1.170) | 17 (0.210) | 10/274 | 8.2 | 16.9% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_KO_pgi | = 4213162 | 73 (0.900) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_KO_pgi | = 4171445 | NA (NA) | 17 (0.210) | 9/272 | 8.5 | NA | noncoding (2805/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| ? | NC_000913_3_KO_pgi | = 4212832 | NA (NA) | noncoding (2790/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913_3_KO_pgi | 3423376 = | 96 (1.170) | 11 (0.140) | 9/274 | 8.6 | 10.4% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_KO_pgi | 3423665 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 164619 | 92 (1.120) | 9 (0.120) | 8/258 | 8.6 | 9.6% | intergenic (+85/‑111) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| ? | NC_000913_3_KO_pgi | = 164621 | 85 (1.120) | intergenic (+87/‑109) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase | |||||
| * | ? | NC_000913_3_KO_pgi | 998439 = | 84 (1.020) | 8 (0.100) | 8/260 | 8.7 | 9.0% | intergenic (+32/‑51) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| ? | NC_000913_3_KO_pgi | 998461 = | 83 (1.080) | intergenic (+54/‑29) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone | |||||
| * | ? | NC_000913_3_KO_pgi | = 2945992 | NA (NA) | 9 (0.120) | 8/264 | 8.8 | 8.4% | noncoding (97/97 nt) | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_KO_pgi | = 4455622 | 98 (1.260) | noncoding (4/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_KO_pgi | 2662491 = | 73 (0.890) | 9 (0.120) | 8/264 | 8.8 | 11.5% | noncoding (183/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_KO_pgi | 2662521 = | 69 (0.880) | noncoding (213/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_KO_pgi | 2662400 = | 89 (1.080) | 9 (0.120) | 8/264 | 8.8 | 10.5% | noncoding (92/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_KO_pgi | 2662521 = | 69 (0.880) | noncoding (213/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||