New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_hsa_pgi | = 226729 | 6 (0.060) | 18 (0.190) | 9/288 | 8.5 | 75.5% | noncoding (971/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913_3_hsa_pgi | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
Rejected: Coverage evenness skew score above cutoff. |
AAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_pgi/226578‑226729 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC > NC_000913_3_hsa_pgi/2728240‑2728387 acGCTATTTAGCTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGGCATCCCGACTTACCAACCCGATGCATACTGCGAATACCGGAGAATGTTATCACGGGAGTCACACGGCGGGTGCTAACGTCCGTC < 1:1255615/147‑1 GCTATTTCGGTAGCGCCTCGGGCACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAACGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGT < 1:1509481/149‑1 CTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCATCCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACGCGGCGGGTGCTAACGTCCGTCGTG > 1:260008/1‑149 ATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTATCCGGTATTCGCAGTTTGCATAGGGTTGGTAAGTCGGGTTGAC > 2:1445759/1‑149 GAATACCGGAGAATGTTATCACGGGAGACACCCGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGTGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGG > 2:739076/1‑149 TTATCACGGGAGACACACGGCGGGTGTTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAG > 1:584227/1‑149 ACGGGAGACACACGGCGGGTGCTATCGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGGTGGTAAGTCGGGATGACCCCCTGGCCGAAACAGTGGTCTACCCACGGAGCTGAATTCACGAGGCGCT > 1:1409527/1‑149 ACACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGCGGCGCTACCTAAA > 1:951079/1‑149 ACACACGGCGGGTGCTAACGTC‑‑‑CGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAG > 1:788460/1‑149 CACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCACGAGCTAACATACTCCTGAATTCACAAATTGCATCGGGTTGGTAAGTCGGGCTGACCCCCGTGCCGAAACAGTGCTCGACCCCCGGAGATGAATACACGAGGCGCTACCTAAAT > 2:153146/1‑149 CACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCACGAGATAAAATTCTCATCTATTAGAAATTTGCATCGGGTTGGTAAGTCGGGATGACCCACTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCCCGAGGCGCTACCTAAAT > 2:969214/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCTTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCACGGAGATGAATTCACGAGGCGCTAACTAAGTA > 2:697376/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGCCCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA > 2:1433238/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA > 1:430911/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGAGGAATTCACGAGGCGCTACCTAAATA > 2:1364470/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGAGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA > 2:1246725/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAACTCGGCATGACCCCCTTGCCGAATCAGTCCTATACCCCCGGAGATCAATTCACGACGCGCTCCCTATATA > 2:474022/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGATTGCATCGGGTTGGTAAGTCGGGTTGACCCCCTTGCCGAAACGGTGCGCTACCCCCGGAGATGCATTCACGAGGCGCTTCCTAAGTA > 1:466583/1‑149 ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATACGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTATACCCCCGGAGTAGAATTCCCGAGGCGCTACCTAAATA > 2:59790/1‑149 CACGGCGGGTGCTAACGTCCGTCGTGTTTCTCACGTGATAACAATCTCCATTAATATAAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAG > 2:206692/1‑149 ACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGCCCCCCTTGCCGAAACAGTGCTCTCCCCCCGGAGATGAATTCACGAGGCGCTACCTATATAGC > 1:1128686/1‑149 CGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATC < 2:1137085/149‑1 TGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCAGGAGATGAATTCACGAGGCGCTAGCTAAATAGCTTTCGGGGAGACCCAGCTATCTg > 1:1246854/1‑148 GTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC < 2:1451563/149‑1 AAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_pgi/226578‑226729 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC > NC_000913_3_hsa_pgi/2728240‑2728387 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |