mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 32.0% | 110.2 / 66.3 | 76 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 31.6% | 86.5 / 53.6 | 79 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 31.5% | 100.2 / 45.7 | 73 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 23.2% | 161.2 / 48.4 | 100 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 47 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 3852834 = | 43 (0.900) | 6 (0.140) | 6/260 | 5.2 | 13.7% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913_3_bme_pgi | 3852867 = | 36 (0.820) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913_3_bme_pgi | 1567452 = | 27 (0.570) | 5 (0.120) | 5/254 | 5.5 | 17.2% | intergenic (‑312/+52) | dosC/yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| ? | NC_000913_3_bme_pgi | 1567487 = | 24 (0.560) | intergenic (‑347/+17) | dosC/yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog | |||||
| * | ? | NC_000913_3_bme_pgi | = 382205 | NA (NA) | 6 (0.130) | 5/280 | 6.0 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_bme_pgi | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_bme_pgi | = 4542691 | 33 (0.690) | 5 (0.110) | 4/264 | 6.2 | 13.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | = 4542987 | 34 (0.760) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | = 2897909 | 35 (0.740) | 4 (0.090) | 4/264 | 6.2 | 11.0% | intergenic (‑39/+55) | ygcS/ygcU | putative MFS sugar transporter; membrane protein/putative FAD‑linked oxidoreductase |
| ? | NC_000913_3_bme_pgi | = 2897913 | 32 (0.720) | intergenic (‑43/+51) | ygcS/ygcU | putative MFS sugar transporter; membrane protein/putative FAD‑linked oxidoreductase | |||||
| * | ? | NC_000913_3_bme_pgi | = 3158899 | 57 (1.200) | 4 (0.090) | 4/266 | 6.3 | 6.9% | intergenic (+15/+28) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein |
| ? | NC_000913_3_bme_pgi | = 3158913 | 55 (1.230) | intergenic (+29/+14) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein | |||||
| * | ? | NC_000913_3_bme_pgi | = 2919898 | 40 (0.840) | 4 (0.090) | 4/266 | 6.3 | 9.8% | coding (849/1341 nt) | gudX | glucarate dehydratase‑related protein, substrate unknown |
| ? | NC_000913_3_bme_pgi | = 2919907 | 36 (0.800) | coding (840/1341 nt) | gudX | glucarate dehydratase‑related protein, substrate unknown | |||||
| * | ? | NC_000913_3_bme_pgi | 3429875 = | 49 (1.030) | 3 (0.070) | 3/260 | 6.7 | 6.4% | coding (149/258 nt) | yrdB | DUF1488 family protein |
| ? | NC_000913_3_bme_pgi | 3429908 = | 42 (0.960) | coding (116/258 nt) | yrdB | DUF1488 family protein | |||||
| * | ? | NC_000913_3_bme_pgi | = 4168341 | 34 (0.710) | 3 (0.070) | 3/262 | 6.8 | 9.3% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913_3_bme_pgi | = 4168363 | 27 (0.610) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_bme_pgi | 3344992 = | 40 (0.840) | 3 (0.070) | 3/262 | 6.8 | 7.2% | coding (276/1434 nt) | rpoN | RNA polymerase, sigma 54 (sigma N) factor |
| ? | NC_000913_3_bme_pgi | 3345024 = | 40 (0.910) | coding (308/1434 nt) | rpoN | RNA polymerase, sigma 54 (sigma N) factor | |||||