New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 20563	NA (NA)	55 (1.160)	47/282	0.1	91.7%	intergenic (‑55/+252)	insA/rpsT	IS1 repressor TnpA/30S ribosomal subunit protein S20
	?	NC_000913_3_bme_pgi	= 61489	5 (0.110)					coding (1776/2907 nt)	rapA	RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase

ATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/20419‑20563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGACGCACT  <  NC_000913_3_bme_pgi/61489‑61342                                                                                                                                                                                                                                                                                                       ATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGT                                                                                                                                                  >  2:717282/1‑149   AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAATTTGGCAGCATCACAGCGTAT                                                                                                                                                >  2:89899/1‑149      GCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGG                                                                                                                                             <  1:11729/149‑1       CTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCGGATAGAACCAGAAGCCACTGGAGCACATCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGT                                                                                                                                            >  2:273263/1‑149               CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGA                                                                                                                                    <  2:717548/149‑1                GGCGGTGCTTTTGCCGTTACGCACCACCCCGTAAATCAATCAACACTGGGGTTGGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGAT                                                                                                                                   <  1:275971/149‑1                 GCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCGTCACCGCGTATTGGTCGTCTGGATC                                                                                                                                  >  1:823514/1‑149                            tgtgtgACGCACCACCCCGTTAGTAGCTAAACAGGACGTACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACAGCATTATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTGTGGATCGTATCGGCCAG                                                                                                                       <  2:336101/143‑1                            GCCGTTACGCAACACCCCGGCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAG                                                                                                                       <  2:244395/149‑1                                TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCCCCGCGTATTGGTCGTCTGGATCGTATCGACAAGGCcc                                                                                                                   >  2:171511/1‑147                                TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGC                                                                                                                   >  1:251101/1‑149                                  ACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCAC                                                                                                                 <  2:317228/149‑1                                      ACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATA                                                                                                             <  1:596114/149‑1                                           CCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAG                                                                                                        <  2:620343/149‑1                                            CCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGA                                                                                                       <  2:723920/149‑1                                                 AGTAGCGCAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGTACCCCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCAT                                                                                                  <  2:255726/149‑1                                                       TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCGGGCGCACGATATTCAGAACCATGTGCCT                                                                                            >  1:393376/1‑149                                                            AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCCGCCAGGCTCACGCTATTCAGATCCATGTGCCTTATCT                                                                                       >  2:30095/1‑149                                                               cGGGACAGCTGATAGAAACAGAAGATACGTGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGA                                                                                    <  2:799271/148‑1                                                               AGGGACAGCTGATAGCAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGA                                                                                    <  1:22460/149‑1                                                                    CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTTGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAA                                                                               <  2:367295/149‑1                                                                     AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCGCGGCGCACGATATTCCAATCCATGTGCCTTATCTGGAGAAAAC                                                                              >  2:738010/1‑149                                                                      GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACC                                                                             <  1:349045/149‑1                                                                       CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTATGGTTCCTCCCGACCAAGCGCACGATATGCAGATCCATGTGCCTTATCTGGGGAAAACCG                                                                            >  1:234987/1‑149                                                                        TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGC                                                                           >  1:628802/1‑149                                                                         GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCT                                                                          >  2:697656/1‑149                                                                          ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGACCAGGCGCACGATATTCAGATCCATGTACCTTATCTGGAGAAAACCGCTC                                                                         >  2:142346/1‑149                                                                              AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCCTGTGCCTTATCTGGAGAAAACCCCTCAGTC                                                                     >  2:814292/1‑149                                                                              AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTC                                                                     >  1:515814/1‑149                                                                                       CCACTGGAGCACCTCAAAAACCCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGT                                                            <  1:424993/149‑1                                                                                         ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGC                                                          >  2:505759/1‑149                                                                                                   CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCGATGTGCCTTATCTGGAGAAAACCGCTCAGACCGAGCTAGTGCGCTGGGATCA                                                >  2:476417/1‑149                                                                                                   CTCAAAAACACCATAATACAGCAAATCAGTAAGGGGGCAGCTGCACGTCGTATTGATCGTGTGGATCGTATCGGCCAGGCGTACGATATTCATATCCATGTGCCTTAGCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCt                                                <  2:64026/149‑2                                                                                                      AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGA                                             <  2:628802/149‑1                                                                                                         AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCCCAGGCGGTGCTGGTGCGCTGGCATCACGAAGG                                          >  1:170383/1‑149                                                                                                             CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGTATTTGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTAAGATACATTTGGCGTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTG                                      <  1:284207/149‑1                                                                                                                TCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGAT                                   <  1:717282/149‑1                                                                                                                  ATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCT                                                       <  2:217247/127‑1                                                                                                                  ATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCT                                                       >  1:217247/1‑127                                                                                                                      ACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTT                             >  1:480412/1‑149                                                                                                                      ACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGAGCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTT                             <  1:286995/149‑1                                                                                                                        TAAATCAGTAAGTTGGCAGCATCACCGCGTATCGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGA                           >  2:808835/1‑149                                                                                                                          AATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGC                         >  1:121794/1‑149                                                                                                                              AGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAAGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACgc                     <  2:524348/149‑3                                                                                                                                TAAGTTGGCAGCATCACCGCGTAGTGGTCGTCTGGATCGTATCGGACAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGATAAAACCGCTCAGTCGGTTCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACGCCT                   >  2:428311/1‑149                                                                                                                                   GTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGA                                             <  2:334063/120‑1                                                                                                                                   GTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGA                                             >  1:334063/1‑120                                                                                                                                    TTGGCAGCATCACCGCGTATTGGTCGTCTGGAACGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCCCAGTCGGTGCTGGTGCGCTGGTATCACGAAGTTATTGATGCAGTTGAGCACACCTGCCt               >  2:798803/1‑148                                                                                                                                         AGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCG          >  2:764784/1‑149                                                                                                                                          GCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGG         >  2:88429/1‑149                                                                                                                                           CATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGA        <  1:88429/149‑1                                                                                                                                           CATCACCGCGTATGGGTGGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGA        <  1:171511/149‑1                                                                                                                                            ATCACCGCGTATTGGTCGGTTGGCTCTTATCGGCCAGGGGCACGATATTCAGATCAATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCTGAC       <  2:489749/149‑1                                                                                                                                               ACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGACGCc    >  1:56238/1‑148                                                                                                                                                 CGCGTATTGGTCGTCTGGATCGTATCGGCCCGGCGTATGCTATGCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGACGCACT  <  1:575758/149‑1                                                                                                                                                                                                                                                                                                       ATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/20419‑20563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGACGCACT  <  NC_000913_3_bme_pgi/61489‑61342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.