| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 20563 | NA (NA) | 55 (0.940) | 47/298 | 0.2 | 98.2% | intergenic (‑55/+252) | insA/rpsT | IS1 repressor TnpA/30S ribosomal subunit protein S20 |
| ? | NC_000913_3_bme_pgi | = 61489 | 1 (0.020) | coding (1776/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase | |||||
GAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/20416‑20563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGAC < NC_000913_3_bme_pgi/61489‑61347 GAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGC > 2:812464/1‑150GAGATAGCGCTGATGTCCGGCGGTACTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGC > 2:473688/1‑150 AGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCG < 1:408158/150‑1 AGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCG < 1:193251/150‑1 GATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGT > 1:124561/1‑150 TAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTAT < 1:570933/150‑1 GCGCTGATGGCCGGCGGTGCTTTTGCCGGGACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCTCCTGAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTG < 1:429654/150‑1 GATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGCACCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGT > 1:539564/1‑150 ATGTCAGGCGGTGCTTTTGCCGTTACGCAACACCCCGTCAGTAGTTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTGAAAAACAACATCATACACTAATTGAGTTAGTTGGCAGCATCACCGCGTATTGTTCGTC < 2:727455/150‑1 TGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCT > 2:920547/1‑150 GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTG < 2:316613/150‑1 CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGA < 1:241566/150‑1 CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGAT < 2:466872/150‑1 CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGGCTGGAT < 2:300960/150‑1 GCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACGGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCG < 1:445570/150‑1 TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATC > 2:287072/1‑150 CTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGG < 1:539552/150‑1 TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGCCGTCTGGATCGTATCGGC > 1:344409/1‑150 TGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAG < 1:488372/150‑1 CGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCG < 2:343833/150‑1 CCCCGTCAGTAGCTGAACAGCAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAG < 1:129165/150‑1 CCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGAT > 1:657785/1‑150 CAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCAT < 1:748998/150‑1 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCTGATCCATGTGCCTTAT < 2:301907/150‑1 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGAGCCTTAT > 1:80367/1‑150 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACTCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGA < 1:812464/150‑1 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACTCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGA < 1:815463/150‑1 AGCTGATAGAAACAGATGCCTCTGGAGCACCTCAAATACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGGCGTCTGGATCGTATCGGCCTGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACC < 2:69138/150‑1 AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACC < 1:13101/150‑1 ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGCAAACCGCTCA > 1:143040/1‑150 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCGGGCGCAGGATATTCAGATCCATGTGCCTTATCTGGAGAAACCCGCTCAGTC > 2:692898/1‑150 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCCGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCCGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTG > 2:272886/1‑150 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTG > 2:870626/1‑150 AGCCACTGGAGCACCTCAAAAACACCATCATACACTTAATCATTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGG < 1:518578/150‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTA < 1:920547/150‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCA > 1:499379/1‑150 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACG < 2:539564/150‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGAACAATGTGCCTTATCAGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAG > 2:49120/1‑150 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCT > 2:706079/1‑150 ACCTTCATACACTAACTCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCATATCGGCCAGACGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTG < 2:599551/150‑1 aCATACACTAAATCACTACGTTGCCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGAgg < 2:941385/149‑3 TACACTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCAT > 1:247664/1‑150 CTAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCTGCCTGGCGCACGATACTCAGATCCATGTGCCTTATCTGCAGAAAACCGCTCAGTCGCTGCTGGTGCGCTGGTATCACTAAGGTCTGGATGCATTTGA > 2:783133/1‑150 TAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAG < 2:124561/150‑1 TAAATCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAG < 2:247664/150‑1 AAATCAGTAAGTTGGCAGCATCCCCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGC < 1:396508/150‑1 TCAGTAAGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGAAGCATTTGAGCACA > 1:576294/1‑150 AGTTGGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCC > 1:279941/1‑150 GTTGGCCGCCTCCCCGCGTAGTGGTCGGCTCGATCGTCGCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCGCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCC < 2:629275/150‑1 TTGGCAGCATCACCGCGTATTGGTCGCCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCG < 1:473688/150‑1 GGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGAC < 2:360561/150‑1 GGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAG < 2:96274/136‑1 GGCAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAG > 1:96274/1‑136 CAGCATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCG > 2:404324/1‑150 CATCACCGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGAC > 1:500063/1‑150 GAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/20416‑20563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTGCTGGTGCGCTGGTATCACGAAGGTCTGGATGCATTTGAGCACACCTGCCCGACCGGAC < NC_000913_3_bme_pgi/61489‑61347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |