| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 3583427 = | NA (NA) | 42 (0.800) +CGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAG |
23/168 | 1.9 | NA | intergenic (+9/‑56) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | NC_000913_3_bme_pgi | 4235463 = | NA (NA) | noncoding (42/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/3583513‑3583427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA > NC_000913_3_bme_pgi/4235463‑4235511 ||||||||||||||||||||||||||||||||||||||||||||||||||||| AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGA > 2:244079/1‑151 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATTTCGGCATCGACCTGTAGGCCTGATGCGACGCGG < 2:160448/151‑1 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGTGGc > 4:382069/1‑149 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCG > 2:426657/1‑151 GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCT < 2:928207/151‑1 TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTA > 2:421172/1‑151 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATC > 3:595873/1‑150 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAG < 2:917733/151‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAG < 1:421172/151‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGACATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAG < 2:158603/151‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGG < 1:380445/151‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAG < 4:469804/150‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATAAGACGCGGTCGCGTCTTATCAGG < 1:839348/151‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 1:802442/151‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 2:187910/151‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATAAGACGCGGTCGCGTCTTATCAGGC < 2:853398/151‑1 AGAGGCCGCTGGAGCACCTCAAAGACACCATCGTACACGACATCAGTAAGTTTGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATCTCGGCTTCGACCTGTAGGCCTGTTGCGACGCGGTCGCGTCTTATCAGGCC < 2:867261/151‑1 AGACGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC < 2:867184/151‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCATCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC < 1:354287/151‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC < 1:426657/151‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC < 1:244079/151‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 4:534484/150‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTGATCAGGCC < 2:950287/151‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACGAAATCAGTAGGTTGGCAGCATCACCTCGTGCTATGTATTAATGGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTAGCAGGCC < 2:233895/151‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTA < 4:595873/150‑1 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGG > 1:202489/1‑144 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGG < 2:202489/144‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCTCCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAG < 3:506220/150‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGG < 1:41499/151‑1 ACTGGAGCACCTCAAACACACCGTCATACACTAAATCACTAAGTTGGCAGCATCACCGCGTGCTATGTAGTAATTGCCGAATACGATGTACCTCCCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGG < 4:335504/150‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATG < 1:209172/151‑1 CACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC > 2:399014/1‑116 CACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC < 1:399014/116‑1 GTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATAAGACGCGGTCGCGTCTTATCg > 3:415824/1‑101 GTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 2:399495/101‑1 GTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC > 1:399495/1‑101 ATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA < 2:454933/109‑1 ATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA > 1:454933/1‑109 CCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGG < 2:804093/87‑1 CCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGG > 1:804093/1‑87 TCGTGCTATGTATTAATTGCTGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 4:585055/86‑1 TCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC > 3:585055/1‑86 TATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATC < 2:684553/76‑1 TATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATC > 1:684553/1‑76 TGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGT < 1:25500/54‑1 TGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGT > 2:25500/1‑54 CGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC > 1:721366/1‑61 CGATGTACATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGCC < 2:721366/61‑1 ||||||||||||||||||||||||||||||||||||||||||||||||||||| AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/3583513‑3583427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA > NC_000913_3_bme_pgi/4235463‑4235511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |