New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1207790 =	7 (0.150)	35 (0.850)	32/240	NT	78.5%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_bme_pgi	1209619 =	13 (0.320)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

GTATTTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/1207952‑1207790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC  >  NC_000913_3_bme_pgi/1209619‑1209765                                                                                                                                                                                                                                                                                                                        GTATTTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCAGAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCC                                                                                                                                                                   <  1:574337/149‑1       CCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATCATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCC                                                                                                                                                             <  1:168185/149‑1               CCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA                                                                                                                                                     <  1:172011/149‑1                              TTTTGCGGGATTCCACCCCCACTGAATGATTACTGATTGCTCAATATCACCAATCATAACCGGTATAGCTATGAAACAGGTGCGTCCTAACGCAGCCGGTGCTTCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA                                                                                                                                      <  1:397660/149‑1                                   CGGCATTCGACCACCTTTGAATGATTAATGATTTCTCAATACCATTAATCATAACCGGTATAGCTATGAAAACGTTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCACACCAACGTTTATGAAAATGAAGAAA                                                                                                                                 <  1:42750/149‑1                                        TTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATCGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTTCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACA                                                                                                                            >  2:217223/1‑149                                        TTCCACCACCACTGAATGATTACTGATTGCGCAAAACCACCAATCATAAACGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACA                                                                                                                            >  2:305486/1‑149                                          CCAGCCCCACTCAATGGTTACTGTTTGCTTAATACCACCAATCATAACCGGTATAGCTATGAAATCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAG                                                                                                                          <  2:139364/149‑1                                           CACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAATTAACAAGa                                                                                                                         >  2:128063/1‑148                                            ACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                                                                                                        >  2:629278/1‑149                                                 CACTGAATGATTACGGATTGGTCAATAGCACCAATCATAACCGGTATAGCTATGAAACCGGCGCGGCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAACTGG                                                                                                                   <  2:459072/149‑1                                                    TGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGGGGCCTAATGTAGCCGTTCCTGCATTGAGTTTTGCTACTTCTCCGAAACCAACGTTTATGAAAATGAAAAAATAACAAACAAATGGCAT                                                                                                                >  2:327104/1‑149                                                           TTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAACCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAATCAACGTTTATAAAAATGAAGAAATAACAACCAAATGGCATCATACCa                                                                                                         >  2:672763/1‑148                                                               TGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACAGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTACCAAACCAACATTTATGAAAATGAAAAAATAACAAGCAAATGGCATCATTCCTGCTT                                                                                                     >  1:190631/1‑149                                                                 ATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGAGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTGTGCTCCTTCTCCCAAAGCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTgt                                                                                                   >  2:813002/1‑147                                                                     CTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA                                                                                               <  2:703213/149‑1                                                                       tgATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGG                                                                                             <  2:218927/147‑1                                                                       CAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGATGAAATAACAAGCAAATGGCATCATTACTGCTTTTACCAGG                                                                                             >  1:633871/1‑149                                                                         ATACCACCAAACATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGACGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG                                                                                           <  1:844018/149‑1                                                                             CACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAAC                                                                                                                                                    >  2:345300/1‑88                                                                             CACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAAC                                                                                                                                                    <  1:345300/88‑1                                                                             CACCAATCATAACCGGTATAGCTATGAAACCGGTACGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAAGGAAGAAATAACGAGCAAATCGCATCATTCCTGCGTTTACCAGGGGGAct                                                                                       >  2:10859/1‑147                                                                               CCAATCATAACCGGTATAGATATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGCAGAAATAACAATCAAATGGCATCATTCCTGCTTTTACCACGGGGATTTt                                                                                     >  2:689620/1‑148                                                                                CAATAATAACCGGTAGAGCTATGAAACGGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA                                                                                    <  2:310178/149‑1                                                                                  ATCATAACCGGTATAGTTAAGCAACCGGTGCGTCCTCATGTAGCCGTTGGTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAATTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA                                                                                  <  2:542422/149‑1                                                                                  ATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA                                                                                  <  1:503376/149‑1                                                                                  ATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA                                                                                  <  1:449976/149‑1                                                                                   TCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT                                                                                 <  1:751078/149‑1                                                                                      TAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCT                                                                              >  1:453446/1‑149                                                                                        ACCGGGATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTA                                                                            <  2:751456/149‑1                                                                                             TATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGC                                                                       <  2:856891/149‑1                                                                                                   tactAAACCGGTGCGTCCTAATGTCGCCGTGGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTA                                                                 <  2:788560/145‑1                                                                                                     TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAACATGAAGAAATAACAAGCAAATGGCATAATTCCTGCCTTTACCAGGGGGATTTAAACTCCTTATTACCTATGTACG                                                               >  2:747034/1‑149                                                                                                       AAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCAAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTATGCG                                                             >  2:704305/1‑149                                                                                                           CGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTACTGCTTTTACAAGGAGGATTTAACATACTTTTTGGCTATGTCCGGATATC                                                         >  1:413472/1‑149                                                                                                                      aaaGTAGCCGTTGCTGCATTGAGGTTTACTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGTGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACC                                              <  2:703678/146‑1                                                                                                                          TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAA                                          <  1:502372/149‑1                                                                                                                                 gGCTGCATTCAGTTTTGTCACTTCTACCAAACCAACGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAT                                   <  2:349034/148‑1                                                                                                                                       ATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGCAGATGAAGAAATTACAAGCAAATTGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAA                             <  1:244851/149‑1                                                                                                                                              TTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATG                      >  2:225783/1‑149                                                                                                                                               TTGCTCTTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGC                     <  2:781804/149‑1                                                                                                                                                  CTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCT                  >  2:225586/1‑149                                                                                                                                                     CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGTGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA               >  1:332784/1‑149                                                                                                                                                     CTTCTCCCAAACACACGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA               <  2:119893/149‑1                                                                                                                                                      TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGTATCATTCCTGCTTTAACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAACGACCAGAACACAGATCTACAACGTAATGCGCTGAAC              >  1:791009/1‑149                                                                                                                                                         TCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAATTAACATGCTTATTGGCTATGTACGCGTATGAACAAATGACAAAAACACATATCTACAAGGTAATACCCTGAACTGg           >  2:285463/1‑148                                                                                                                                                           CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATGTACCACACAATGCGCTGAACGGTGa         >  2:588328/1‑148                                                                                                                                                                CCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGAGGAACTAACATGCTTATTGGCTATGTCCGCGTATCAACAAATGACCAAACCACAGATCTACAACGCAATGCGCTGAACTGTGCAGGAT    >  2:398449/1‑149                                                                                                                                                                  AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAAATGCTTATTGGCTATGTACGCGTATCAACAAATGACCACAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGCTGC  >  2:398101/1‑149                                                                                                                                                                                                                                                                                                                        GTATTTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/1207952‑1207790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC  >  NC_000913_3_bme_pgi/1209619‑1209765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.