mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 2,090,126 | 0 | C | T | 23.0% | 218.0 / 68.9 | 114 | intergenic (+80/‑66) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 22.7% | 363.4 / 99.8 | 177 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 2,090,124 | 0 | C | G | 22.4% | 273.1 / 84.5 | 116 | intergenic (+78/‑68) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913_3_bme_pgi | 223,854 | 0 | T | A | 22.2% | 48.3 / 14.8 | 27 | noncoding (84/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| * | NC_000913_3_bme_pgi | 223,855 | 0 | T | A | 22.2% | 47.3 / 13.7 | 27 | noncoding (85/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| * | NC_000913_3_bme_pgi | 2,090,122 | 0 | A | G | 22.0% | 242.6 / 64.8 | 118 | intergenic (+76/‑70) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913_3_bme_pgi | 3,332,823 | 0 | T | C | 20.9% | 188.4 / 45.7 | 92 | intergenic (‑88/+39) | yhbE/rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| * | NC_000913_3_bme_pgi | 3,332,822 | 0 | G | A | 20.6% | 184.3 / 47.5 | 92 | intergenic (‑87/+40) | yhbE/rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 20.5% | 328.8 / 78.9 | 127 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 20.2% | 264.2 / 73.6 | 129 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 731 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 1449037 = | 99 (0.930) | 33 (0.350) | 27/222 | 5.3 | 27.1% | intergenic (+19/+39) | feaB/tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| ? | NC_000913_3_bme_pgi | 1449064 = | 89 (0.930) | intergenic (+46/+12) | feaB/tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring | |||||
| * | ? | NC_000913_3_bme_pgi | = 228108 | NA (NA) | 33 (0.320) | 25/240 | 6.5 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3946053 | 6 (0.060) | 32 (0.310) | 24/240 | 6.7 | 84.7% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 274419 | NA (NA) | 30 (0.290) | 22/238 | 7.2 | NA | coding (699/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_bme_pgi | = 274423 | NA (NA) | coding (695/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_bme_pgi | = 1757687 | 112 (1.050) | 20 (0.210) | 19/220 | 7.5 | 16.6% | intergenic (+30/+34) | lpp/ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| ? | NC_000913_3_bme_pgi | = 1757688 | 102 (1.080) | intergenic (+31/+33) | lpp/ldtE | murein lipoprotein/murein L,D‑transpeptidase | |||||
| * | ? | NC_000913_3_bme_pgi | = 225281 | NA (NA) | 28 (0.270) | 21/238 | 7.5 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3944978 | NA (NA) | 24 (0.240) | 20/236 | 7.8 | 35.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4038811 | 45 (0.420) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | 1552249 = | NA (NA) | 24 (0.250) | 18/224 | 7.9 | NA | noncoding (1/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | 1552279 = | NA (NA) | noncoding (31/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | 1552071 = | NA (NA) | 24 (0.250) | 18/224 | 7.9 | NA | noncoding (1/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | 1552279 = | NA (NA) | noncoding (31/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | 1217091 = | 91 (0.850) | 21 (0.210) | 19/232 | 7.9 | 18.8% | intergenic (+95/‑237) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913_3_bme_pgi | 1217145 = | 96 (0.960) | intergenic (+149/‑183) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||