mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 31.6% | 333.7 / 191.4 | 231 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 225,465 | 0 | A | . | 25.0% | 27.8 / 10.6 | 18 | intergenic (+8/‑35) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 23.0% | 524.9 / 156.9 | 209 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 225,467 | 1 | . | T | 22.2% | 29.7 / 14.7 | 18 | intergenic (+10/‑33) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 22.0% | 463.8 / 146.3 | 220 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 21.3% | 488.3 / 108.3 | 212 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 496 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 4542683 = | 118 (0.790) | 32 (0.230) | 27/238 | 10.3 | 21.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | 4542997 = | 120 (0.860) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | 2727891 = | NA (NA) | 38 (0.270) | 24/244 | 11.7 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3944978 | NA (NA) | 37 (0.260) | 23/244 | 12.1 | 37.0% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4038811 | 66 (0.440) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 227052 | 63 (0.420) | 37 (0.260) | 23/244 | 12.1 | 38.1% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 2726042 | 154 (1.030) | 24 (0.180) | 21/234 | 12.3 | 15.2% | intergenic (‑296/+27) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | = 2726046 | 128 (0.940) | intergenic (‑300/+23) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 4542691 | 128 (0.860) | 23 (0.170) | 21/238 | 12.5 | 16.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | = 4542987 | 118 (0.850) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | = 3943635 | NA (NA) | 31 (0.220) | 21/242 | 12.7 | 36.9% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4037446 | 56 (0.370) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | 925857 = | 121 (0.810) | 33 (0.240) +ACGGGCTTTTT |
20/234 | 12.7 | 23.0% | intergenic (+317/+27) | clpA/serW | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser |
| ? | NC_000913_3_bme_pgi | 1097195 = | NA (NA) | intergenic (+366/+370) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_bme_pgi | = 3250988 | 110 (0.740) | 23 (0.170) | 18/232 | 13.5 | 18.4% | intergenic (+34/‑36) | yqjF/yqjG | putative quinol oxidase subunit/putative S‑transferase |
| ? | NC_000913_3_bme_pgi | = 3250992 | 105 (0.770) | intergenic (+38/‑32) | yqjF/yqjG | putative quinol oxidase subunit/putative S‑transferase | |||||
| * | ? | NC_000913_3_bme_pgi | 1097379 = | NA (NA) | 25 (0.170) | 20/250 | 13.6 | 23.2% | intergenic (+550/+186) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_bme_pgi | 1097524 = | 85 (0.570) | intergenic (+695/+41) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||