| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 1437201 = | 43 (0.690) | 14 (0.240) | 13/252 | 5.1 | 27.3% | noncoding (81/109 nt) | micC | sRNA antisense regulator of OmpC translation, Hfq‑dependent |
| ? | NC_000913_3_bme_pgi | 1437225 = | 34 (0.580) | noncoding (105/109 nt) | micC | sRNA antisense regulator of OmpC translation, Hfq‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/1437313‑1437201‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggctt‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGCTG > NC_000913_3_bme_pgi/1437225‑1437373 TATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGA < 1:327678/144‑1TATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGA > 2:327678/1‑144 CTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCG < 4:92962/150‑1 TGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTTGTCTTTTTATATGTTGGAAAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAG > 2:690740/1‑150 GATTATCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCA > 3:29474/1‑150 TCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTTGTCTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGT < 4:397083/85‑1 TCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTTGTCTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGT > 3:397083/1‑85 AAAGCCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGT < 1:236017/110‑1 AAAGCCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGT > 2:236017/1‑110 CCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAA < 2:615033/146‑1 CCCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAA > 1:615033/1‑146 CCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTT > 3:230971/1‑150 CCGGACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTT > 1:151181/1‑150 GACGACTGTTCGGGCTT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTG < 4:230971/150‑1 TT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGCT > 3:342160/1‑150 TT‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGCT < 2:224878/150‑1 T‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGCTG < 1:165743/150‑1 TATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/1437313‑1437201‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggctt‑TTTTTTTAGAA‑TTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGCTG > NC_000913_3_bme_pgi/1437225‑1437373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |